Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31198
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    26   0.28 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    26   0.28 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   4.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 LQQWHCHWGALNGEGSEHTVDG 310
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  N*WIPRAAGIRHEGDFS 90
           N W+P+   +RH+GD S
Sbjct: 130 NIWVPQKYRLRHKGDGS 146


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 245 LQQWHCHWGALNGEGSEHTVDG 310
           +QQW+ +WG L G  S  T+DG
Sbjct: 333 VQQWNSYWGIL-GFPSAPTIDG 353



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 40  N*WIPRAAGIRHEGDFS 90
           N W+P+   +RH+GD S
Sbjct: 130 NIWVPQKYRLRHKGDGS 146


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 56  GLQEFGTRVTSRVKSGASLPPLKWRDSVN 142
           G+    T  T   KS ASLPP+ +  +V+
Sbjct: 280 GVTSLLTLSTQHAKSQASLPPVSYLKAVD 308


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 426 FGSEHPQLDKVVQVLPFVPH 485
           FGS+   ++ +VQ +P VP+
Sbjct: 861 FGSDDTSINMIVQEVPEVPY 880


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 82  HPRAEFLQPGGSTSYRAA 29
           + + EFL PGGS   R A
Sbjct: 65  YAKCEFLNPGGSVKDRIA 82


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 548 AYWTYPGSLTTPPCTG 595
           A W   G++T+PP  G
Sbjct: 162 AVWVLAGAITSPPLLG 177


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,356
Number of Sequences: 438
Number of extensions: 5619
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)