Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31198
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28210.1 68415.m03425 carbonic anhydrase family protein simil... 43 2e-04
At1g08080.1 68414.m00884 carbonic anhydrase family protein simil... 40 0.001
At4g21000.1 68417.m03039 carbonic anhydrase family protein simil... 36 0.018
At4g20990.1 68417.m03038 carbonic anhydrase family protein simil... 36 0.031
At1g08065.1 68414.m00882 carbonic anhydrase family protein simil... 35 0.054
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 33 0.13
At5g04180.1 68418.m00406 carbonic anhydrase family protein simil... 32 0.38
At1g69890.1 68414.m08043 expressed protein contains Pfam profil... 31 0.51
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb... 31 0.67
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb... 31 0.67
At4g14200.1 68417.m02191 expressed protein 30 1.2
At2g31850.1 68415.m03889 expressed protein 30 1.2
At5g54330.1 68418.m06766 hypothetical protein contains Pfam prof... 30 1.5
At5g63820.1 68418.m08010 expressed protein contains Pfam profile... 29 2.7
At2g20080.2 68415.m02347 expressed protein 29 3.6
At2g20080.1 68415.m02346 expressed protein 29 3.6
At3g52720.2 68416.m05809 carbonic anhydrase family protein low s... 28 4.7
At3g52720.1 68416.m05808 carbonic anhydrase family protein low s... 28 4.7
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 4.7
At1g17210.1 68414.m02097 expressed protein distantly related to ... 28 4.7
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 28 4.7
At5g06260.1 68418.m00700 nucleolar protein-related contains weak... 28 6.2
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 28 6.2
At1g29530.1 68414.m03612 expressed protein 27 8.2
>At2g28210.1 68415.m03425 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 217
Score = 42.7 bits (96), Expect = 2e-04
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 4/127 (3%)
Frame = +2
Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTKQVPQLLGGGGKTKWTS 403
+N YKL Q H H SEHT++GR F+ ELH+VH N + G S
Sbjct: 91 VNGTEYKLLQLHWH------SPSEHTMNGRRFALELHMVHEN-------ING-------S 130
Query: 404 RPRVLLMVWVGTPTAR*SCTG---TAFRASQRR*SYI-LLAPRPCQAASTKTAYWTYPGS 571
V ++ +G P + +A Y+ ++ PR + S K ++ Y GS
Sbjct: 131 LAVVTVLYKIGRPDSFLGLLENKLSAITDQNEAEKYVDVIDPRDIKIGSRK--FYRYIGS 188
Query: 572 LTTPPCT 592
LTTPPCT
Sbjct: 189 LTTPPCT 195
>At1g08080.1 68414.m00884 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 275
Score = 40.3 bits (90), Expect = 0.001
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Frame = +2
Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTKQVPQLLGGGGKTKWTS 403
+N Y+LQQ H H SEHT++GR F+ ELH+VH G+ + +
Sbjct: 119 INGFEYELQQLHWH------SPSEHTINGRRFALELHMVH------------EGRNRRMA 160
Query: 404 RPRVLLMVWVGTPTAR---*SCTGTAFRASQRR*SYILLAPRPCQAASTKTAYWTYPGSL 574
VL + R G A + + ++ P + S K Y+ Y GSL
Sbjct: 161 VVTVLYKIGRADTFIRSLEKELEGIA-EMEEAEKNVGMIDPTKIKIGSRK--YYRYTGSL 217
Query: 575 TTPPCT 592
TTPPCT
Sbjct: 218 TTPPCT 223
>At4g21000.1 68417.m03039 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 260
Score = 36.3 bits (80), Expect = 0.018
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +2
Query: 239 YKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVHWNTKQVPQLLG 376
YKL Q CHW + SEHT++G S+ ELH+VH + ++G
Sbjct: 120 YKLVQ--CHWHS----PSEHTINGTSYDLELHMVHTSASGKTTVVG 159
>At4g20990.1 68417.m03038 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 267
Score = 35.5 bits (78), Expect = 0.031
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Frame = +2
Query: 260 CHWGALNGEGSEHTVDGRSFSGELHLVHWNTKQVPQLLGGGGKTKWTSRPRVLLMVWVGT 439
CHW + SEHTV+G + ELH+VH + + ++G ++ +G
Sbjct: 124 CHWHS----PSEHTVNGTRYDLELHMVHTSARGRTAVIG--------------VLYKLGE 165
Query: 440 PTAR*SCTGTAFRA-SQRR*SYILLAPRPCQAASTKTAYWTYPGSLTTPPCT 592
P + +A + + ++ PR + + K ++ Y GSLT PPCT
Sbjct: 166 PNEFLTKLLNGIKAVGNKEINLGMIDPREIRFQTRK--FYRYIGSLTVPPCT 215
>At1g08065.1 68414.m00882 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 263
Score = 34.7 bits (76), Expect = 0.054
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = +2
Query: 152 SIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGEL 331
+I N G+ + G ++ L G +N YKLQQ H H SEHT++G+ F E
Sbjct: 79 TIKNRGHDIMMKFEGGNAGL-GITINGTEYKLQQIHWH------SPSEHTLNGKRFVLEE 131
Query: 332 HLVH 343
H+VH
Sbjct: 132 HMVH 135
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 239 YKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 343
Y+LQQ H H SEHT++G+ F+ E HLVH
Sbjct: 226 YQLQQLHWH------SPSEHTINGKRFALEEHLVH 254
>At5g04180.1 68418.m00406 carbonic anhydrase family protein similar
to storage protein (dioscorin) [Dioscorea cayenensis]
GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 277
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 343
+N+ YKL Q HW A SEH +DG+ + ELH+VH
Sbjct: 106 INDTDYKLVQ--SHWHA----PSEHFLDGQRLAMELHMVH 139
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +2
Query: 545 TAYWTYPGSLTTPPCT 592
T ++ Y GSLTTPPCT
Sbjct: 195 TKFYEYRGSLTTPPCT 210
>At1g69890.1 68414.m08043 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 279
Score = 31.5 bits (68), Expect = 0.51
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 74 TRVTSRVKSGASLPPLKWRDSVNHPRSIVNPGYCWRVD 187
TR + +++ LPP WR+SV H S V + W VD
Sbjct: 107 TRYGNLLRANGGLPP--WRNSVTHDTSHVLDSFLWDVD 142
>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 140
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 462 VQLYRAVGVPTQTINRTLGRLVHLVFPPPPR--SCGTCFVF 346
++ R+ G Q +RT GR+ V PP PR SCG C F
Sbjct: 79 IERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAF 119
>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
gb|R64895 come from this gene
Length = 145
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 462 VQLYRAVGVPTQTINRTLGRLVHLVFPPPPR--SCGTCFVF 346
++ R+ G Q +RT GR+ V PP PR SCG C F
Sbjct: 79 IERSRSNGGGAQRHHRTTGRVSPAVDPPSPRISSCGCCSAF 119
>At4g14200.1 68417.m02191 expressed protein
Length = 784
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 122 KWRDSVNHP-RSIVNPGYCWRVDENGYDSELKGGPLNNDVYKLQQWHCHWGALNGEGSEH 298
K + N P + NPG + + + E+K + D ++ + N +G++H
Sbjct: 122 KEETATNFPAKGTENPGETQQCNNSSTACEMKSSEVVQDSCEVPPVEVESASENRQGAQH 181
Query: 299 TVDGRSFSGELHLVHWNTKQVPQLLGGG 382
+ +G S S E + + Q Q++ GG
Sbjct: 182 STEGHSMSSETVI---ESSQEAQVIDGG 206
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 333 CSSPENERPSTVCSEPSPLSAPQWQCHCCN 244
CSSP++ S P P AP C CC+
Sbjct: 75 CSSPDSSTGSNSVPAPVPSPAPAGSCCCCS 104
>At5g54330.1 68418.m06766 hypothetical protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 356
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 290 SEHTVDGRSFSGELHLVHWNTKQVPQLLGGGGK 388
SEH V+ RS GE+ LV W K+ +++ G K
Sbjct: 236 SEHLVESRSTGGEMFLVKW-YKRTAEIVNGVAK 267
>At5g63820.1 68418.m08010 expressed protein contains Pfam profile
PF04776: Protein of unknown function (DUF626)
Length = 225
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 100 WSFPAAIEMAGLCQSSSFHRQSWLLLACR 186
+SF AG ++H Q W +LACR
Sbjct: 99 FSFQTVFSAAGCYNQDTYHVQDWRVLACR 127
>At2g20080.2 68415.m02347 expressed protein
Length = 151
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 295 TYSGRSLVLRRTTPGSLEHKASTTTSGRRGENQMD*PP*SPINGLGRNTHSSIKLY 462
T+ GR V+ + P S +S++ + RRG+ P P GLG I+L+
Sbjct: 4 TFFGRPNVVGSSPPSSSPTSSSSSPATRRGKKNGSEKPKQPQRGLGVAQLEKIRLH 59
>At2g20080.1 68415.m02346 expressed protein
Length = 178
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 295 TYSGRSLVLRRTTPGSLEHKASTTTSGRRGENQMD*PP*SPINGLGRNTHSSIKLY 462
T+ GR V+ + P S +S++ + RRG+ P P GLG I+L+
Sbjct: 4 TFFGRPNVVGSSPPSSSPTSSSSSPATRRGKKNGSEKPKQPQRGLGVAQLEKIRLH 59
>At3g52720.2 68416.m05809 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 230
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 551 YWTYPGSLTTPPCT 592
Y+ Y GSLTTPPC+
Sbjct: 204 YYRYIGSLTTPPCS 217
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 343
+ N Y L Q H H SEH + G ++ ELH+VH
Sbjct: 108 IENKNYTLLQMHWH------TPSEHHLHGVQYAAELHMVH 141
>At3g52720.1 68416.m05808 carbonic anhydrase family protein low
similarity to storage protein (dioscorin) [Dioscorea
cayenensis] GI:433463; contains Pfam profile PF00194:
Eukaryotic-type carbonic anhydrase
Length = 284
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 551 YWTYPGSLTTPPCT 592
Y+ Y GSLTTPPC+
Sbjct: 204 YYRYIGSLTTPPCS 217
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 224 LNNDVYKLQQWHCHWGALNGEGSEHTVDGRSFSGELHLVH 343
+ N Y L Q H H SEH + G ++ ELH+VH
Sbjct: 108 IENKNYTLLQMHWH------TPSEHHLHGVQYAAELHMVH 141
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 23 GGGRSITSGSPGLQEFGTRVTSRVKSGASLPPLKWR 130
GGG S S P L+E+GT +T + G L P+ R
Sbjct: 266 GGGSSGNSKMPTLEEYGTNLTKLAEEG-KLDPVVGR 300
>At1g17210.1 68414.m02097 expressed protein distantly related to
dentin phosphoryn [Homo sapiens] (GI:4322670)
Length = 958
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = -2
Query: 618 RREAKSPTPVQGGVVKDPGYVQ*AVLVEAA---WQGRG 514
RR A+SP+P Q G AVLV A W G G
Sbjct: 36 RRRARSPSPPQTAAASSAGASSPAVLVNAGSVDWTGHG 73
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 363 GTCFVFQ*TRCSSPENERPSTVCSEPSPLSAPQWQC 256
G F+ CS+ + R +C +P+ L+ +W C
Sbjct: 2138 GPSFILPNVACSNCDAYRDLDICRDPALLTEKEWSC 2173
>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
similarity to nucleolar protein C7C (GI:13540302)
[Rattus norvegicus]
Length = 424
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 86 SRVKSGASLPPLKWRDSVNHPRSIVNPGYCWRV 184
S V+ G +P L + DSV+ R ++ Y W +
Sbjct: 194 STVRPGYQVPHLLYEDSVSSDRLLLKKEYAWHI 226
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 499 LHFASPSTLPSCFHQDSLLDVPRVFDNTTLHRSRGFGFSSF 621
LH+ + L SCF + +V N +S G+GF F
Sbjct: 116 LHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEF 156
>At1g29530.1 68414.m03612 expressed protein
Length = 236
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +2
Query: 20 RGGGRSITS-GSPGLQEFGTRVTSRVKSGA 106
RG S++S GS G QEFGT+ +S + S A
Sbjct: 36 RGSDSSLSSPGSQGNQEFGTKDSSALLSSA 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,977,812
Number of Sequences: 28952
Number of extensions: 407982
Number of successful extensions: 1183
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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