Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31196
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   0.87 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.5  
SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    26   4.6  

>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 28.3 bits (60), Expect = 0.87
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 514 DNDVAPEGYHYLYETENKI 570
           DND+ PE Y  LYE E+K+
Sbjct: 132 DNDLEPEVYDILYEEESKL 150


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 132 KPGRYVADPGRYDPSRDN 185
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 57  WPPKLESTLLSSTTRVYSTVSPFVYKPGRYVADPGRY 167
           W P L + L +  T+ YST   F+ +  R + D GR+
Sbjct: 31  WYPLLIAPLPNLLTKKYSTSHDFLQEEDRNLLDFGRF 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,964,552
Number of Sequences: 5004
Number of extensions: 33265
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)