Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31196
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)                 30   1.2  
SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  

>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
          Length = 420

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 20  VFLAICLSLTVALAAETGKYTPFQYNPSLLYCF 118
           VFL   +S+TV + +  GKY P  YN +++  F
Sbjct: 132 VFLVWGISITVGVLSVVGKYEPLAYNVTVIALF 164


>SB_7214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 IPRASHTHIRCQQGGHTHIR 449
           +P   HTHIR     HTHIR
Sbjct: 145 LPSTQHTHIRLHSTQHTHIR 164



 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 IPRASHTHIRCQQGGHTHIR 449
           +P   HTHIR     HTHIR
Sbjct: 205 LPLTQHTHIRLPSTQHTHIR 224



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 390 IPRASHTHIRCQQGGHTHIR 449
           +P   HTHIR     HTHIR
Sbjct: 195 LPSTQHTHIRLPLTQHTHIR 214



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
 Frame = +3

Query: 363 VPLPVVKPT---IPRASHTHIRCQQGGHTHIR 449
           + LP+ + T   +P   HTHIR     H+HIR
Sbjct: 203 IRLPLTQHTHIRLPSTQHTHIRLPSTQHSHIR 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,683,706
Number of Sequences: 59808
Number of extensions: 288451
Number of successful extensions: 1183
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)