Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31196
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein. 29 2.4
AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta p... 29 2.4
AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha ... 29 2.4
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type tran... 28 5.6
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 28 5.6
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -2
Query: 506 MMPYL*S*PAPLGGTTLLATYVGVTTLLATYVGV 405
MMPY+ PA G T L Y+GV+T L Y+G+
Sbjct: 89 MMPYVFI-PACAGFTVGLLPYLGVSTQLQGYIGI 121
>Z54270-7|CAE48496.1| 492|Caenorhabditis elegans Hypothetical
protein F11C1.6b protein.
Length = 492
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 69 LESTLLSSTTRVYSTVSPFVYKPGRYVADP 158
L+S LSS+T +VS F+ +PG Y+ DP
Sbjct: 97 LQSPTLSSSTNQQLSVSDFIMRPG-YLVDP 125
>Z54270-6|CAA91028.1| 572|Caenorhabditis elegans Hypothetical
protein F11C1.6a protein.
Length = 572
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 69 LESTLLSSTTRVYSTVSPFVYKPGRYVADP 158
L+S LSS+T +VS F+ +PG Y+ DP
Sbjct: 177 LQSPTLSSSTNQQLSVSDFIMRPG-YLVDP 205
>AF179216-1|AAF67040.1| 233|Caenorhabditis elegans NHR-25 protein.
Length = 233
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 69 LESTLLSSTTRVYSTVSPFVYKPGRYVADP 158
L+S LSS+T +VS F+ +PG Y+ DP
Sbjct: 177 LQSPTLSSSTNQQLSVSDFIMRPG-YLVDP 205
>AF179215-1|AAF67039.1| 492|Caenorhabditis elegans NHR-25 beta
protein.
Length = 492
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 69 LESTLLSSTTRVYSTVSPFVYKPGRYVADP 158
L+S LSS+T +VS F+ +PG Y+ DP
Sbjct: 97 LQSPTLSSSTNQQLSVSDFIMRPG-YLVDP 125
>AF179214-1|AAF67038.1| 568|Caenorhabditis elegans NHR-25 alpha
protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 69 LESTLLSSTTRVYSTVSPFVYKPGRYVADP 158
L+S LSS+T +VS F+ +PG Y+ DP
Sbjct: 173 LQSPTLSSSTNQQLSVSDFIMRPG-YLVDP 201
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LPVVKPTIPRASHTHIRCQQGGHTHIRCQQXGP 467
LPV PT P + +HI + GG + I+ Q P
Sbjct: 1137 LPVQAPTQPENAESHIDQETGGASEIKDDQNQP 1169
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LPVVKPTIPRASHTHIRCQQGGHTHIRCQQXGP 467
LPV PT P + +HI + GG + I+ Q P
Sbjct: 1137 LPVQAPTQPENAESHIDQETGGASEIKDDQNQP 1169
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 LPVVKPTIPRASHTHIRCQQGGHTHIRCQQXGP 467
LPV PT P + +HI + GG + I+ Q P
Sbjct: 1137 LPVQAPTQPENAESHIDQETGGASEIKDDQNQP 1169
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 469 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 564
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
>Z48783-1|CAA88701.1| 780|Caenorhabditis elegans Hypothetical
protein F33H1.1a protein.
Length = 780
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 469 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 564
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF233652-1|AAF63475.1| 780|Caenorhabditis elegans RFX-type
transcription factor DAF-19 short variant protein.
Length = 780
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 469 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 564
P+G ++ Y I Y N V P G + LY ++
Sbjct: 153 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 184
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 469 PSGAGYDYKYGIIRYDNDVAPEGYHYLYETEN 564
P+G ++ Y I Y N V P G + LY ++
Sbjct: 178 PNGTREEFDYNQIEYGNAVTPNGTYTLYAPDS 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,810
Number of Sequences: 27780
Number of extensions: 202621
Number of successful extensions: 804
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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