Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31196
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 368 PARREAYHSPCQSHPHTLPARWSHPH 445
           P+     H P Q HPH    R S PH
Sbjct: 314 PSYHPHQHHPSQYHPH----RGSSPH 335


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 380 HDGQGNNAGSLVSITKVFA 324
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 380 HDGQGNNAGSLVSITKVFA 324
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 380 HDGQGNNAGSLVSITKVFA 324
           H G G N G  + ITK+ A
Sbjct: 148 HTGVGRNVGYKIPITKLTA 166


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -2

Query: 476 PLGGTTLLATYVGVTTLLATYVGVTGTGNGRLH 378
           P   T L++ Y GV+  L T+          LH
Sbjct: 268 PTEKTPLISLYYGVSICLVTFASALAVVTLNLH 300


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 323 QQIPW*CLQGIQHCS 367
           QQI W  L+ IQ CS
Sbjct: 557 QQIAWMALKMIQACS 571


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,854
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)