Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31195
(370 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 169 2e-43
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 105 2e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 103 1e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 58 4e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 8e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.001
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.003
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.075
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 31 0.075
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 0.70
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom... 27 1.2
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 4.9
SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces pombe... 25 4.9
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 25 4.9
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 4.9
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch... 24 6.5
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 24 6.5
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb... 24 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 169 bits (410), Expect = 2e-43
Identities = 85/122 (69%), Positives = 91/122 (74%)
Frame = +3
Query: 3 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 182
SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F
Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200
Query: 183 TTTAEREIVRDIKRNSAMSPSTSSRKWXXXXXXXXXXXXTSFLTGQVITIGNERFRCPEA 362
+TTAEREIVRDIK ++ GQVITIGNERFR PEA
Sbjct: 201 STTAEREIVRDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEA 260
Query: 363 LF 368
LF
Sbjct: 261 LF 262
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 105 bits (253), Expect = 2e-24
Identities = 51/122 (41%), Positives = 71/122 (58%)
Frame = +3
Query: 3 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 182
SLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200
Query: 183 TTTAEREIVRDIKRNSAMSPSTSSRKWXXXXXXXXXXXXTSFLTGQVITIGNERFRCPEA 362
TA+ E VR++K + G+VI +G+ER+ CPE
Sbjct: 201 NRTADFETVREMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPEC 260
Query: 363 LF 368
LF
Sbjct: 261 LF 262
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 103 bits (246), Expect = 1e-23
Identities = 51/122 (41%), Positives = 72/122 (59%)
Frame = +3
Query: 3 SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 182
+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+
Sbjct: 146 ALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205
Query: 183 TTTAEREIVRDIKRNSAMSPSTSSRKWXXXXXXXXXXXXTSFLTGQVITIGNERFRCPEA 362
++AE+EIVR+IK S + Q IT+G E F PE
Sbjct: 206 VSSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEV 265
Query: 363 LF 368
LF
Sbjct: 266 LF 267
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 58.0 bits (134), Expect = 4e-10
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = +3
Query: 27 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 200
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.0 bits (99), Expect = 8e-06
Identities = 21/65 (32%), Positives = 39/65 (60%)
Frame = +3
Query: 33 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 212
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 213 DIKRN 227
+IK +
Sbjct: 217 EIKES 221
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.7 bits (81), Expect = 0.001
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +3
Query: 6 LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTE 167
LYA G G+V+D G + PI +G + A +L L GR +T +L +L E
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRE 241
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.5 bits (78), Expect = 0.003
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 24 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 182
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 30.7 bits (66), Expect = 0.075
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +3
Query: 9 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 182
+ +G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 30.7 bits (66), Expect = 0.075
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 9 YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 176
+ASG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 27.5 bits (58), Expect = 0.70
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +3
Query: 147 LMKILTERGYSFTTTAEREIVRDIKRNSAMSPSTSSRKWXXXXXXXXXXXXTSFLTGQVI 326
L K+L E S ++ V D +++ S STSSRK+ TSF+ +
Sbjct: 713 LRKLLEEADTSSNFSSSNNHVLDSSKHTVSSASTSSRKFIENYKSLESIGLTSFVKDNKL 772
Query: 327 TIGNE 341
E
Sbjct: 773 KASKE 777
>SPAC1296.04 |mug65||spore wall assembly protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 26.6 bits (56), Expect = 1.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 76 STKVTLCPTPSSVWTW 123
STK CP PS W W
Sbjct: 52 STKTATCPDPSWEWAW 67
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 4.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Frame = -3
Query: 155 FHEVVGQ--VATSQVQTEDGVGQSV--TFVDGYGVGDTISG 45
FHE+V T+Q+ T+ G+GQS+ + G +G T G
Sbjct: 42 FHEIVFVFIACTAQLMTQAGLGQSIAPNNIIGKSLGTTNPG 82
>SPCC970.03 |||cytochrome b5 reductase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/16 (62%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Frame = +1
Query: 61 PTPYPSTKVTLC-PTP 105
P P P TKV +C PTP
Sbjct: 256 PAPSPETKVLICGPTP 271
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 197 LSGGGERVTPLGEDFHEVVGQVATSQVQTEDGVGQS 90
LSG G +TPL F + QV + V QS
Sbjct: 469 LSGSGSGLTPLSSHFPSAATGLVGGQVYPQSSVLQS 504
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 24.6 bits (51), Expect = 4.9
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +3
Query: 45 SGDGVSHTVPIYEGYALP 98
+G G+ H + + +GYA+P
Sbjct: 157 AGRGIGHQIMVEQGYAMP 174
>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 167 LGEDFHEVVGQVATSQVQTEDGVGQSVTFV 78
+G + E +G + S V+ +DGV +TF+
Sbjct: 399 IGLAYEEALGYMVGSIVRDKDGVNALITFL 428
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 83 FVDGYGVGDTISGVEHDTGGTTGGVQ 6
FV+ G G IS +H+TGG T G Q
Sbjct: 339 FVEKNG-GSLISTSDHETGGLTVGRQ 363
>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 281
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +1
Query: 64 TPYPSTKVTLCPTPSSVWTWL 126
T YP L P+ SS W W+
Sbjct: 156 TKYPLGAAPLRPSQSSKWQWI 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,582
Number of Sequences: 5004
Number of extensions: 27809
Number of successful extensions: 102
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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