Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31195
         (370 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              43   1e-06
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   8.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 42.7 bits (96), Expect = 1e-06
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +3

Query: 315 GQVITIGNERFRCPEALF 368
           GQVITIGNERFRCPEALF
Sbjct: 20  GQVITIGNERFRCPEALF 37



 Score = 37.1 bits (82), Expect = 7e-05
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 257 EMGTAGASTSLEKSYELPDG 316
           EM TA +S+SLEKSYELPDG
Sbjct: 1   EMATAASSSSLEKSYELPDG 20


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = +2

Query: 98  PRHPPSGLGWSRLDRLPHENPHREGLLVHH 187
           P H   G G S +   PH + H      HH
Sbjct: 414 PHHHTMGHGHSHIHATPHHH-HSHAATPHH 442


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 324  SPAPSGSS*DFSREVEAPAVPISCSKS 244
            SP+  G + D S  + +P  P+S S++
Sbjct: 1380 SPSDRGRNDDGSDRLTSPPTPLSISRA 1406



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 56  CLPHRTHLRRLRSAPRHPPS 115
           C P   +L ++ S P HPP+
Sbjct: 79  CDPVPGNLEQIGSRPLHPPA 98


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 60  SHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 158
           +H +  Y GY  P   +  D A  + T+  MK+
Sbjct: 187 NHQLISYAGYKNPDGTIIGDPANIEFTELCMKL 219


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 221 LDVTNDFPLSGGGERVTPLGEDFHEVVGQVATSQVQTEDGVGQS-VTFVDGYGVGDT 54
           +D+T     S  G+ V     + + +VG  A   +  E+G G + VT  + +   DT
Sbjct: 19  VDLTQCLQESSTGQSVEFSPMELNALVGTPAAPNMPAEEGEGMAGVTGEEPFDTLDT 75


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 87  NLRRWVRCGRHH 52
           +L R  RCGR+H
Sbjct: 412 DLMRNTRCGRYH 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,457
Number of Sequences: 438
Number of extensions: 2143
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)