Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31193
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    24   0.67 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   4.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   4.7  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 24.2 bits (50), Expect = 0.67
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 373 IKLRINFVNSSQNIGKLKKN*N 308
           IKL IN + S  N  KLK N N
Sbjct: 136 IKLSINIILSDPNTNKLKLNTN 157


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 35  NLQERNLNHNK 67
           NL++ NLNHN+
Sbjct: 319 NLEKSNLNHNE 329


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 35  NLQERNLNHNK 67
           NL++ NLNHN+
Sbjct: 211 NLEKSNLNHNE 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,780
Number of Sequences: 336
Number of extensions: 1605
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)