Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31193
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm rece...    27   7.6  

>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -2

Query: 140 QQFDAFN*TSIKFTPFK*LKKFMFICYDLNFSP 42
           QQF  F   + +    K L K  F+CYD  F+P
Sbjct: 432 QQFKIFRQLNFQGPATKTLGKLKFLCYDEEFNP 464


>AF022974-2|AAC48038.1|  344|Caenorhabditis elegans Seven tm
           receptor protein 209 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -1

Query: 288 VFMRIILVIPNVYAY*LISEYSWKIYTFNAKRRIILVIIIRGAFYLILASTVRCV*LNFN 109
           +F  I  ++ N+    LI+E S K       + +I+++ I   FY +L  TVR V  +F 
Sbjct: 13  IFGVIFALLHNLLLIFLITEKSHK--ELGTYKNLIILVAISECFYAVLEVTVRPVIHSFG 70

Query: 108 *VYSI 94
             +++
Sbjct: 71  FTFAL 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,023,732
Number of Sequences: 27780
Number of extensions: 130463
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)