Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31191
         (543 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5UK58 Cluster: Putative uncharacterized protein; n=1; ...    34   2.4  
UniRef50_A3J084 Cluster: Putative uncharacterized protein; n=2; ...    32   9.8  

>UniRef50_A5UK58 Cluster: Putative uncharacterized protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 400

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 187 SLPSNHVSHFNYIDFIFFRSD*ASVTSKSIL*SFSRDTDHEN 312
           S+ + +V  FNY   I F  + A +TS+SIL +  RD   EN
Sbjct: 30  SVETEYVELFNYTQTILFELEKAEITSESILENLKRDVGVEN 71


>UniRef50_A3J084 Cluster: Putative uncharacterized protein; n=2;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 246

 Score = 31.9 bits (69), Expect = 9.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = +1

Query: 103 LYKRILSSDGF-IQ-FLFYISHFYYYNLRVSLPSNHVSHFNYIDFIFFRSD*ASVTSKSI 276
           L  +IL S+ + +Q  LFY   +Y YN  +       +  NY++  FF SD   + SK  
Sbjct: 99  LLDKILFSNNYEVQKVLFYHESYYPYNFYIQTEKFRKAIINYVNSDFFHSDFLMMESKKT 158

Query: 277 L*SF 288
             SF
Sbjct: 159 YNSF 162


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,532,680
Number of Sequences: 1657284
Number of extensions: 6727483
Number of successful extensions: 17017
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16988
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34989170748
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)