Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31191
         (543 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    29   0.34 
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    29   0.34 
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    28   1.0  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   3.1  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   5.5  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    25   7.2  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.2  

>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 106 YKRILSSDG--FIQFLFYISHFYYYNLRVSL-PSNHVSHFNYIDFIFFRSD 249
           YKR+L ++   F + + Y+ HF    L ++  PSN V++ NY + + F  D
Sbjct: 494 YKRLLYNEWERFAKLVAYLDHFGDEILSINFDPSNAVTYINYANKVAFIRD 544


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 145 LFYISHFYYYNLRVSLPSNHVSHFNYIDFIFFRS 246
           L Y++  Y    ++SLP +H  ++  I ++FF++
Sbjct: 75  LIYLADKYDTERKISLPRDHPEYYKVIQYLFFQA 108


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = -3

Query: 394 PYEYLIEAPIRLPSPANTGVSLQWSL--YHFHDQYLSKTITRY 272
           P E+ +        P +TG+S QW +  + FH    S T  +Y
Sbjct: 194 PNEFSVSLTTNSQDPKSTGISFQWIVVDFQFHLPDFSSTPAKY 236


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 15  VRFKKEKKTVVFINCHFFAFCVNNYRFRYFIQTY 116
           +RF K  +  ++I     A+C  NY +R FIQ Y
Sbjct: 3   IRFLKRLRAPLYIQN---AYCSKNYFYRSFIQYY 33


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 58  VIFLHSV*IIIVFGTLYKRILSSDG--FIQFLFYISHFYYYNLRVSLPSN 201
           ++F HS+ +++    +    + S G  FI F+   S +Y+++ +V+ P N
Sbjct: 334 LLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGN 383


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 302 SVSLENDYKILFDVTDAQSDRKNIKSI 222
           S+S+    +    + D QSD KN+KSI
Sbjct: 44  SLSVAKGQQHTLTIADVQSDMKNLKSI 70


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -1

Query: 375 KRRSVSQAQRTRAFHYNGLYII 310
           + +S+ ++Q+ R+F+ N LYI+
Sbjct: 851 RAKSIPKSQQVRSFYINDLYIL 872


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,889,143
Number of Sequences: 5004
Number of extensions: 32112
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)