Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31191
         (543 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_28689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 369

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 25/70 (35%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
 Frame = +1

Query: 193 PSNHVSHFNYIDFIFFRSD*----ASVTSKSIL*SFSRDTDHENDIKTIVMKRPCSLGL- 357
           P N      Y D +  R+D     AS   K IL   S   D  N+I  + MKR   LG  
Sbjct: 211 PENSPEKARYTDALSLRNDWRTAKASGDYKGILAFLSATFDSVNEINAVFMKREDCLGPE 270

Query: 358 -GDGSALQSD 384
             DGS L  D
Sbjct: 271 DEDGSGLDYD 280


>SB_43382| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 861

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 149 NKNCINPSLDKIRLYKVPKTIIIY 78
           N NC + SLDK   Y  PK   +Y
Sbjct: 13  NNNCFSDSLDKAVTYSSPKDDFLY 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,401,243
Number of Sequences: 59808
Number of extensions: 224389
Number of successful extensions: 489
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)