Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31191
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   6.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   6.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 190 LPSNHVSHFNYIDFI 234
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 190 LPSNHVSHFNYIDFI 234
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 205 VSHFNYIDFIFFRSD*ASVTSKSIL*SFSRDTDH-ENDIK 321
           + HFNY+  IF  S  +    +++L  F   + + E+D++
Sbjct: 162 LKHFNYMKVIFIHS--SDTDGRALLGRFQTTSQNLEDDVE 199


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 190 LPSNHVSHFNYIDFI 234
           LP NH+ +  Y+D I
Sbjct: 361 LPENHLKNAKYLDVI 375


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 318 KDHCNETPVFAGLGRRIGAS 377
           +DHCN+T V   +   +GA+
Sbjct: 200 EDHCNKTAVRKVISGVVGAA 219


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -2

Query: 143 NCINPSLDKIRLY 105
           NC++P+L K+ L+
Sbjct: 594 NCLDPNLPKLALF 606


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,599
Number of Sequences: 438
Number of extensions: 2205
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)