Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31184
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    29   0.51 
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    29   0.51 
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    28   0.90 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    28   0.90 
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   1.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   4.8  
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    25   4.8  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    25   6.3  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   6.3  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    25   8.4  
SPAC750.07c |||S. pombe specific GPI anchored protein family 1|S...    25   8.4  

>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 19/86 (22%), Positives = 41/86 (47%)
 Frame = +1

Query: 136 LRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQF 315
           L+ + SL+  E+YL+ +  P    P +   R+  +  ++  + L  +   +    + +QF
Sbjct: 55  LQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRL--NPLAPIGARQPNPSIPQQF 112

Query: 316 NSPINLYSEQNIANSIRQQTSPLPTN 393
           + PIN      +  ++ + TSP+  N
Sbjct: 113 SKPINESGTGTMGPAVGELTSPVMKN 138


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 90  SATGRTAPLLSCSRGAKVRREPGPTGELPASSPQPSN 200
           SA+    P LS +R ++V REP    E+P+  P PSN
Sbjct: 511 SASPPPVPRLSITR-SQVSREPEKPEEIPSVPPLPSN 546


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +2

Query: 242 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRN 343
           + RW  RCC E    R L C  S  T QS    N
Sbjct: 342 SSRWDFRCCREERLLRLLLCFDSEHTGQSFIQLN 375


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 145 EGSLAPQESYLRHHPNPAMRAPPNHDY-RDTLMKQKVAESVLQRVVGEEAPKVLHKQ 312
           E S A +   L  HP+  ++   N+    + LMKQK+ E     V+ +EA ++L  +
Sbjct: 466 ESSSAFRLLLLNMHPHDELKQLINNAVDENALMKQKINEEEETEVIAQEAEEILQDE 522


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 138 KVRREPGPTGELPASSPQPSNEGT 209
           KVR + G T +LP SSPQ S  G+
Sbjct: 515 KVRDKKGSTQQLPTSSPQNSVYGS 538


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 257  SRCCSEWLAKRHL 295
            SRCC+ WL+  HL
Sbjct: 2269 SRCCTMWLSNSHL 2281


>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 115 SSRAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVV 279
           SS A   LR +GSL   + Y+ HH +P      +    D  +K+ V E++L  +V
Sbjct: 46  SSGASVPLR-QGSLIYLQRYIVHHWSPLFEQFQDGPIPDENVKKHVRETLLHLLV 99


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 160 PQESYLRHHPNPA-MRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ 312
           P+ + ++   +P  +R  P++     L KQ++ + V       E PK  HK+
Sbjct: 170 PKSAVVQQRDDPVYIRYTPSNQMGQALSKQRIIKMVTAEQDPMEPPKFRHKK 221


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 18/68 (26%), Positives = 27/68 (39%)
 Frame = +1

Query: 121 RAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKV 300
           R P    S     PQ    + H          H  + T+ K K+ + V +RVV ++ PK+
Sbjct: 115 RQPSVFNSSVPSLPQHLSTKSHSVSTHGVDAFHKDQATIPK-KLKKDVDERVVSKDIPKL 173

Query: 301 LHKQFNSP 324
                 SP
Sbjct: 174 HRDSVESP 181


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 211 EVPSLLGWGDDAGNSPV 161
           EVP +  W  DAGN P+
Sbjct: 709 EVPEVFKWLKDAGNVPI 725


>SPAC750.07c |||S. pombe specific GPI anchored protein family
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 308 LCNTLGASSPTTR 270
           L NTLG SSPTT+
Sbjct: 90  LVNTLGGSSPTTK 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,697
Number of Sequences: 5004
Number of extensions: 45340
Number of successful extensions: 132
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)