Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31184
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 0.39
02_04_0293 + 21644415-21644533,21644686-21645118 29 2.1
08_02_0982 + 23275852-23275992,23277363-23277467 29 2.7
07_03_0190 + 14893243-14893582,14893684-14893808 28 3.6
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690... 28 4.8
06_01_0283 + 2083627-2084334,2085759-2085986 28 4.8
02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420 27 6.3
01_04_0078 + 15796336-15797130 27 6.3
10_01_0326 + 3574129-3574329,3575144-3575692,3575914-3576072,357... 27 8.4
04_01_0418 - 5531652-5531827,5535111-5535195,5535250-5535402,553... 27 8.4
02_04_0435 + 22912993-22913456,22913847-22914012,22914096-229141... 27 8.4
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 8.4
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 31.5 bits (68), Expect = 0.39
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 274 VVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTN 393
V G++ PK L+ F L + +NI S++ SP PTN
Sbjct: 746 VTGKDCPKGLYGTFCKACPLGTYKNITGSLKSLCSPCPTN 785
>02_04_0293 + 21644415-21644533,21644686-21645118
Length = 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 294 RCLFANHSLQHRLCHLLFHKGITVVVVRRCPHC 196
RC +H LQHR C L+ + V RRC C
Sbjct: 29 RCGHCHHRLQHRYCSELYPR---VAAYRRCNWC 58
>08_02_0982 + 23275852-23275992,23277363-23277467
Length = 81
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 142 SEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQ 270
SEG++A S+L+H +P P+ R T ++K++ S +Q
Sbjct: 36 SEGAVASYGSWLKHQFSPLPELAPSDTRRSTAGEKKMSYSSVQ 78
>07_03_0190 + 14893243-14893582,14893684-14893808
Length = 154
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = -2
Query: 193 GWGDDAGNSPVGPGSLRTLAPREHERSGAV 104
G GDD G PG RT PR+ RSG +
Sbjct: 49 GDGDDDGGPRRWPGLSRTSPPRDLRRSGLI 78
>11_05_0050 +
18665251-18665613,18667280-18667744,18668548-18669037,
18669115-18669143
Length = 448
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +1
Query: 160 PQESYLRH-HPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAPKVLHKQ-FNSPINL 333
PQ +Y+ H PNP + + P V S + G P + Q FN P N
Sbjct: 138 PQPAYMSHPKPNPHVFSSP--------CSPVVFNSPSNHLAGSTTPTPNNLQVFNGPRNP 189
Query: 334 YSEQNIANSIRQQTSPLPTN 393
+ + +N + T+P P N
Sbjct: 190 HVSNSPSNHLAGSTTPTPNN 209
>06_01_0283 + 2083627-2084334,2085759-2085986
Length = 311
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Frame = +1
Query: 130 GELRSEGSLAPQESYLRHH-------PNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEE 288
GE SE ++ +E YL H P A P + +TLM++ +++++ GE+
Sbjct: 112 GEYFSEEAMREREPYLHHEYLGRFQDPTGRAMARPGERWSETLMRRAEEAVIVEKIRGEQ 171
>02_02_0579 + 11755361-11755545,11755695-11755763,11755904-11756420
Length = 256
Score = 27.5 bits (58), Expect = 6.3
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = +3
Query: 36 QLLPERIPGILNILKKKLSATGRTAPLLSCSRGAKVRREPGPTGELPASSPQPS 197
QLLP P +L +L L+A R A L +R R P P PAS P S
Sbjct: 198 QLLPTATP-LLPLLS--LAAAPRAATLRRRARHRAGRLSPSPATAAPASMPAAS 248
>01_04_0078 + 15796336-15797130
Length = 264
Score = 27.5 bits (58), Expect = 6.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 103 VPHHSSRAPGELRS--EGSLAPQESYLRHHPNPAMRAPP 213
V H+SS P + E ++ P +Y ++PN A+ PP
Sbjct: 40 VGHNSSTTPPIISGPQETTILPSHNYSSYNPNTALAPPP 78
>10_01_0326 +
3574129-3574329,3575144-3575692,3575914-3576072,
3576349-3577543,3577626-3577762,3578052-3578242,
3578888-3579218
Length = 920
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +1
Query: 109 HHSSRAPG---ELRSEGS-LAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQ 270
HH+ +P +RS+ S L L P P++ PP+ + DT + K+ E L+
Sbjct: 682 HHTDTSPATHSSVRSDDSHLDSLNEALSITPTPSLVLPPDDEMTDTQVYDKIEEICLR 739
>04_01_0418 -
5531652-5531827,5535111-5535195,5535250-5535402,
5535516-5535632,5536136-5536363
Length = 252
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +3
Query: 12 KCNNVAQPQLLPERIPGILNILKKKLSATGRTAPLL 119
+C + ++ ++P R+P ILN+ K + PL+
Sbjct: 14 RCGDGSENPVVPPRVPSILNLASHKCLDQSKFLPLI 49
>02_04_0435 +
22912993-22913456,22913847-22914012,22914096-22914146,
22914353-22914578,22915275-22915963,22916055-22916408
Length = 649
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 163 QESYLRHHPNPAMRAPPNHD-YRDTLMKQKV 252
+E +R H PA RAP D YR ++ +KV
Sbjct: 194 EEDIIRKHTTPAYRAPEMWDLYRREVISEKV 224
>01_06_0481 -
29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +2
Query: 368 SKLRLCQLTAITDGRTLSRGKSFTRNATMQQSTHILIDALMLL 496
S+LRL +T T RT++ K F + +THI +D +L+
Sbjct: 804 SQLRLSAITLQTGLRTMAALKEFMFRKQNKATTHIQMDIKLLV 846
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,059
Number of Sequences: 37544
Number of extensions: 355106
Number of successful extensions: 1249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -