Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31184
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)                   31   0.70 
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            30   1.2  
SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)                    29   2.8  
SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)                     29   2.8  
SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)              29   2.8  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            28   3.7  
SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)                 27   6.5  
SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)                  27   6.5  
SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
 Frame = +1

Query: 34  PNFFPNGYQGS*TS*RRSCQQLAVP-----HHSSRAPGELRSEGSLAPQESYLRHHPNPA 198
           P+F P  Y     S      Q+A       H   ++P   RS     PQ  Y+  HP+  
Sbjct: 428 PHFSPRAYMQDPASSGVGTMQIATTMAHSMHGQLQSPHAYRSSMPPQPQPMYIPGHPHAM 487

Query: 199 MRAPPNHDY 225
           M  PP H +
Sbjct: 488 MMPPPGHPH 496


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +2

Query: 314 STLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS-RGKSFTRNAT 451
           ST +S  T  RT+ + S ++ R+C++   T GR+   RGK   +N+T
Sbjct: 155 STTRSPVTVARTITSQSSNRQRVCEIFGNTSGRSRRVRGKRVQQNST 201


>SB_25189| Best HMM Match : Drf_FH1 (HMM E-Value=4.1)
          Length = 570

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 300 HLRCLFANHSLQHR-LCHLLFHKGITVVVVRRCPHC 196
           H  C +   +LQ+R LCH L HK    V ++ C HC
Sbjct: 329 HKLCYYV--ALQYRSLCHYLLHKLCYCVALQYCSHC 362


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 57  PGILNILKKKLSATGRTAPLLSCSRGAKVRREPGPTGELPASSP 188
           P I  + +K L+   RT    S S+  K RR    +GEL  S+P
Sbjct: 286 PKIKQVTQKVLADACRTIDCFSMSKSLKRRRREADSGELSPSTP 329


>SB_40833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +2

Query: 242 NKRWQSRCCSEWLAKRHLRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLS 421
           N  W S  CS  LA        +N  + ++  RNR  +T +G+       +A      L+
Sbjct: 229 NSPWYSEACSSTLASAFSSGSWNNRKIVTVDVRNRCTKTHTGT-----SASAPLAAGILA 283

Query: 422 RGKSFTRNATMQQSTHILI 478
                 RN T +   HI++
Sbjct: 284 MALEVNRNLTWRDMQHIVV 302


>SB_54736| Best HMM Match : TF_Otx (HMM E-Value=1.7)
          Length = 123

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
 Frame = +3

Query: 57  PGILNILKKKLSATGRTA---PLLSCSRGAKVRREPGPTGELPAS-SPQPSNEGTS*PRL 224
           P +  +L  +  AT  +    P  + S  + +RR PGP+G + AS S  P       P  
Sbjct: 13  PTVPTLLAPRAFATAPSVSEVPASTVSSSSPLRRSPGPSGTISASTSGSPRTLNQDSPPS 72

Query: 225 P*YPYETKGG 254
           P  P E+ GG
Sbjct: 73  PSQP-ESDGG 81


>SB_29293| Best HMM Match : Ant_C (HMM E-Value=2.2)
          Length = 759

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 57  PGILNILKKKLSATGRTAPLLSCSRGAKVRREPGPTGELPASSPQPSNEGTS 212
           P    +L ++L  T   +PLL    G + R    P G L      P +EG S
Sbjct: 595 PDTSPVLMRRLKKTAVVSPLLEVVEGNRPRPRSVPPGMLLFDPTDPESEGLS 646


>SB_5588| Best HMM Match : 3-dmu-9_3-mt (HMM E-Value=0.25)
          Length = 526

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 272 EWLAKRHLRCCTSNSTLQS-IYTRNRTLQTLSGSKLRL 382
           EWL  +H R C   S  Q+   T+NRT+ T S  ++RL
Sbjct: 51  EWLVAKHERACHRASEFQAKTMTKNRTIWTPS-PRIRL 87


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 9/102 (8%)
 Frame = +1

Query: 109 HHSSRAPGELRSEGSLAPQESYLR-HH----PNPAMRAP-PNHDYRDTL---MKQKVAES 261
           HHS R P    S  +  P  +  R HH    P PA  +P   H  R  +      +V +S
Sbjct: 625 HHSPRTPLPAYSPRTTLPANTTPRVHHSPRTPLPAYTSPRVRHSPRTPVPAYTSPRVHQS 684

Query: 262 VLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIRQQTSPLP 387
               +     P+VLH    +P+  Y+   + +S R   +PLP
Sbjct: 685 PRTSLPAYSTPRVLHSP-RTPVPAYTSPRVLHSPR---TPLP 722


>SB_40568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = +1

Query: 106 PHHSSRAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV-LQRVVG 282
           P     AP     + S   +++  R  P P    P N +   +L  +KV E++ ++R+  
Sbjct: 160 PRRLPEAPQTNPEDSSPGNRKAANRETPPPGTSTPKNIEAASSLQHEKVVETLEIRRMAV 219

Query: 283 EEAPKVLHKQFNSPINL 333
           EE  K   K  N    L
Sbjct: 220 EEKRKKRMKYENGETGL 236


>SB_46914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = -3

Query: 366 PDRVCNVLFRV*IDWRVELLVQHLRCLFANHSLQHR-----LCHLLFHK 235
           PD   N +  + +  R + L+ H+R  F N   + R     L HL+FHK
Sbjct: 71  PDTTANQITSMFVKIRKQELIIHIRLTFENEHRRIRLQPGLLIHLIFHK 119


>SB_42875| Best HMM Match : RGM_C (HMM E-Value=2.6e-27)
          Length = 471

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 9   YKCNNVAQPQLLPERIPGILNILKKK 86
           +KC+NV     LPE+  G+LNI KK+
Sbjct: 135 HKCDNVT----LPEKEKGLLNIFKKR 156


>SB_21203| Best HMM Match : MFS_1 (HMM E-Value=0.0055)
          Length = 554

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +1

Query: 112 HSS--RAPGELRSEGSLAPQESYLRHHPNPAMRAPPN 216
           HSS  R PG LR  GS+  ++S  +  P+P   AP N
Sbjct: 398 HSSILRRPGSLRRPGSMISRQSSFQETPSPE-HAPLN 433


>SB_47910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 299 CCTSNSTLQSIYTRNRTLQTLS 364
           CC + +TL+ I T  R LQT+S
Sbjct: 390 CCGNRATLEKILTFGRYLQTMS 411


>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 462 DCC--IVAFLVKDLPLDNVRPSVMAVSWQRRSLLPDRV 355
           +CC  +  F + DLP+D+   S+    WQ+     DR+
Sbjct: 251 ECCWTLFCFCMDDLPVDDGSGSIDCCQWQKDDPDEDRI 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,262
Number of Sequences: 59808
Number of extensions: 386109
Number of successful extensions: 1205
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)