Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31184
(497 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 31 0.33
At3g44200.1 68416.m04739 protein kinase family protein contains ... 31 0.57
At3g03950.2 68416.m00414 expressed protein contains Pfam profile... 28 3.0
At3g03950.1 68416.m00413 expressed protein contains Pfam profile... 28 3.0
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 28 3.0
At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator iden... 28 4.0
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 27 5.3
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 27 5.3
At5g03890.1 68418.m00365 hypothetical protein 27 5.3
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 27 5.3
At1g12970.1 68414.m01506 leucine-rich repeat family protein 27 7.0
At3g05430.1 68416.m00595 PWWP domain-containing protein contains... 27 9.3
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 27 9.3
At1g52325.1 68414.m05906 hypothetical protein 27 9.3
At1g19390.1 68414.m02412 wall-associated kinase, putative simila... 27 9.3
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 31.5 bits (68), Expect = 0.33
Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +1
Query: 115 SSRAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESVLQRVVGEEAP 294
+ PGE + GS +++Y P PA+ D V+ S ++R V E
Sbjct: 343 TDHTPGETNNAGSYNMEDTYAAADPVPALAGRSEVD-DGNYFATTVSSSKVKRRVCYECG 401
Query: 295 KVLHKQFNSPINLYSEQNIANS-IRQQT-SPLPTNGHYGRP 411
+ H PI L + ANS + Q+T P YG P
Sbjct: 402 EKGHLSTACPIKLQKADDQANSKLGQETVDGRPAMQSYGLP 442
>At3g44200.1 68416.m04739 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 941
Score = 30.7 bits (66), Expect = 0.57
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 289 APKVLHKQFNSPINLYSEQNIANSIRQQTSPLPTNGHYGRPHVVKRQVFY*KRHNA 456
AP LH + + +N +S+ S+ Q S L N + PH V V + RH++
Sbjct: 702 APLPLHVEPSHQVNSHSDNK--TSVMSQNSALEKNNSHSHPHPVVDDVIHVIRHSS 755
>At3g03950.2 68416.m00414 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 424
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 238 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 366
MKQ V+ LQR GE P+ K I YSE ++ N I+
Sbjct: 217 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 259
>At3g03950.1 68416.m00413 expressed protein contains Pfam profile
PF04146: YT521-B-like family
Length = 425
Score = 28.3 bits (60), Expect = 3.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +1
Query: 238 MKQKVAESVLQRVVGEEAPKVLHKQFNSPINLYSEQNIANSIR 366
MKQ V+ LQR GE P+ K I YSE ++ N I+
Sbjct: 218 MKQDVSAVDLQRYNGENFPESFVKAKFFVIKSYSEDDVHNCIK 260
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 251 WQSRCCSEWLAKRHLRCCTSNSTLQS-IYTRNRTLQTL 361
++ C +WL HL C + TL S I T N L++L
Sbjct: 281 YERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSL 318
>At1g43850.1 68414.m05052 SEUSS transcriptional co-regulator
identical to SEUSS transcriptional co-regulator
[Arabidopsis thaliana] gi|18033922|gb|AAL57277
Length = 877
Score = 27.9 bits (59), Expect = 4.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 51 RIPGILNILKKKL--SATGRTAPLLSCSRGAKVRREPGPTGELPASSPQPSNE 203
+I ++N +K + S RT P+ S AK R GP+ LP SPQ +++
Sbjct: 537 QISEVVNSMKDLIDYSRETRTGPIESL---AKFPRRTGPSSALPGPSPQQASD 586
>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +1
Query: 85 SCQQLAVPHHSSRAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV 264
+CQ + PG++ SLA ++ H P+ P N + + + A+ V
Sbjct: 596 NCQSQKWFSNGKIQPGKVSDSNSLASEKE---HQPSRLASDPKNQSHSSDIRRVGEADIV 652
Query: 265 LQRVVGEEAPK 297
+ + E+PK
Sbjct: 653 ISHIQKPESPK 663
>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +1
Query: 85 SCQQLAVPHHSSRAPGELRSEGSLAPQESYLRHHPNPAMRAPPNHDYRDTLMKQKVAESV 264
+CQ + PG++ SLA ++ H P+ P N + + + A+ V
Sbjct: 596 NCQSQKWFSNGKIQPGKVSDSNSLASEKE---HQPSRLASDPKNQSHSSDIRRVGEADIV 652
Query: 265 LQRVVGEEAPK 297
+ + E+PK
Sbjct: 653 ISHIQKPESPK 663
>At5g03890.1 68418.m00365 hypothetical protein
Length = 179
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 330 IDWRVELLVQHLRCLFANHSLQHRLCHLL 244
+++R + V H+ F+ HS+ H HLL
Sbjct: 22 LEYREPISVHHILTQFSGHSISHNNTHLL 50
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 60 GILNILKKKLSATGRTAPLLSCSRGAKVRREPGPTG-ELPASSPQPS 197
GI+NI +K S P LSC KV P P+ SSP S
Sbjct: 166 GIINIQEKPKSNGSDQFPTLSCRTHLKVFNNPVPSSLNRSVSSPSSS 212
>At1g12970.1 68414.m01506 leucine-rich repeat family protein
Length = 464
Score = 27.1 bits (57), Expect = 7.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 160 PQESYLRHHPNPAMRAPPN 216
P SY+ HH +PA APP+
Sbjct: 9 PLLSYVLHHSDPASHAPPS 27
>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
Pfam profile:PF00855 PWWP domain
Length = 965
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = +2
Query: 323 QSIYTRNRTLQTLSGSKLRLCQLTAITDGRTLSRGKSFTRNATMQQST 466
+S+Y +T + L+ + LR+ ++ TL KS+T+ ++ ST
Sbjct: 327 RSVYCLMKTHEPLNRAPLRVPLSGSLVSAETLGNPKSYTKAMNVKDST 374
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 26.6 bits (56), Expect = 9.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = +1
Query: 181 HHPNPAMRAPPNHD--YRDTLMKQKVAESVLQRVV---GEEAPKVLHKQFNSPI 327
H+P P M+ PP HD Y M+Q E + + G E P +H P+
Sbjct: 400 HNPPPYMQPPPRHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPM 453
>At1g52325.1 68414.m05906 hypothetical protein
Length = 145
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 293 LRCCTSNSTLQSIYTRNRTLQTLSGSKLRLCQLTAI 400
L CCT T +S Y + T +L K QL+ +
Sbjct: 31 LECCTEEKTYRSFYVEDSTSSSLIFLKTLFLQLSEL 66
>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
Biol. 39 (6), 1189-1196 (1999))
Length = 788
Score = 26.6 bits (56), Expect = 9.3
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Frame = -2
Query: 187 GDDAGNSPVGPGSLRTLAP-------REHERSGAVRPVADNFFF 77
GDD N+PV GS+R P R+ + SG+V D+ F+
Sbjct: 85 GDDGYNNPVSYGSIRVKIPITSIGCSRDGKESGSVLNFTDSPFY 128
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,580,056
Number of Sequences: 28952
Number of extensions: 255530
Number of successful extensions: 830
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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