Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31183
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor...   189   4e-47
UniRef50_A1Z8Y3 Cluster: CG30042-PA; n=4; Diptera|Rep: CG30042-P...    37   0.43 
UniRef50_Q1FGC9 Cluster: Glycoside hydrolase, family 26:type 3a,...    35   1.3  
UniRef50_A6S058 Cluster: Mitochondrial ribosome small subunit co...    35   1.3  
UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA...    34   2.3  
UniRef50_A7FN62 Cluster: Pilus biogenesis protein; n=3; Yersinia...    34   2.3  
UniRef50_Q290D6 Cluster: GA15599-PA; n=1; Drosophila pseudoobscu...    34   3.0  
UniRef50_UPI0000F1FF4E Cluster: PREDICTED: hypothetical protein;...    33   5.3  
UniRef50_Q17GE7 Cluster: Tripartite motif protein trim2,3; n=2; ...    33   7.0  
UniRef50_Q0W6D4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_A7MEY1 Cluster: Putative uncharacterized protein; n=2; ...    32   9.3  
UniRef50_P52172 Cluster: Box A-binding factor; n=3; Drosophila m...    32   9.3  

>UniRef50_Q08738 Cluster: Larval cuticle protein LCP-30 precursor;
           n=1; Bombyx mori|Rep: Larval cuticle protein LCP-30
           precursor - Bombyx mori (Silk moth)
          Length = 239

 Score =  189 bits (461), Expect = 4e-47
 Identities = 92/126 (73%), Positives = 92/126 (73%)
 Frame = +3

Query: 138 YKPGRYVTDPGRYDPSRDNSGRYIPDNSGAYNXXXXXXXXXXXXXXXXXXXXXXXXXXXX 317
           YKPGRYV DPGRYDPSRDNSGRYIPDNSGAYN                            
Sbjct: 39  YKPGRYVADPGRYDPSRDNSGRYIPDNSGAYNGDRGDRGAAGGFYTGSGTAGGPGGAYVG 98

Query: 318 XKEDLSKYLGDAYKGSSIVPLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPSGAGCD 497
            KEDLSKYLGDAYKGSSIVPLPVVKPTI VPVTPTYV SKVVTPTYV SKVVPPSGAG D
Sbjct: 99  TKEDLSKYLGDAYKGSSIVPLPVVKPTIPVPVTPTYVASKVVTPTYVASKVVPPSGAGYD 158

Query: 498 YKYGII 515
           YKYGII
Sbjct: 159 YKYGII 164



 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 37/38 (97%), Positives = 37/38 (97%)
 Frame = +2

Query: 23  MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTGSPFV 136
           MRVFLAICLSLTVALAAETGKYTPFQYNRVYST SPFV
Sbjct: 1   MRVFLAICLSLTVALAAETGKYTPFQYNRVYSTVSPFV 38



 Score = 47.2 bits (107), Expect = 3e-04
 Identities = 25/55 (45%), Positives = 33/55 (60%)
 Frame = +1

Query: 418 PHTLAARW*HPHTLAARWCHPAGPGATTNTGS*RXXNDVSAEGYHYLCETENKIL 582
           P  +A++   P  +A++   P+G G     G  R  NDV+ EGYHYL ETENKIL
Sbjct: 132 PTYVASKVVTPTYVASKVVPPSGAGYDYKYGIIRYDNDVAPEGYHYLYETENKIL 186


>UniRef50_A1Z8Y3 Cluster: CG30042-PA; n=4; Diptera|Rep: CG30042-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 259

 Score = 36.7 bits (81), Expect = 0.43
 Identities = 16/26 (61%), Positives = 18/26 (69%)
 Frame = +1

Query: 517 RXXNDVSAEGYHYLCETENKILGGRS 594
           R  +DV  +GYHYL ETEN ILG  S
Sbjct: 163 RQEDDVEVDGYHYLWETENGILGEES 188


>UniRef50_Q1FGC9 Cluster: Glycoside hydrolase, family 26:type 3a,
           cellulose-binding:Carbohydrate binding family 6
           precursor; n=1; Clostridium phytofermentans ISDg|Rep:
           Glycoside hydrolase, family 26:type 3a,
           cellulose-binding:Carbohydrate binding family 6
           precursor - Clostridium phytofermentans ISDg
          Length = 728

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 366 SIVPLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPS 482
           ++ P P VKPT+    TPT   +  V PT   +  V PS
Sbjct: 532 TVTPTPTVKPTVTPTATPTATPTPTVKPTVTPTPTVTPS 570



 Score = 32.3 bits (70), Expect = 9.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 375 PLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPS 482
           P P VKPT+   VTPT      VTPT   +    P+
Sbjct: 521 PTPTVKPTVTPTVTPTPTVKPTVTPTATPTATPTPT 556


>UniRef50_A6S058 Cluster: Mitochondrial ribosome small subunit
           component S19; n=2; Sclerotiniaceae|Rep: Mitochondrial
           ribosome small subunit component S19 - Botryotinia
           fuckeliana B05.10
          Length = 93

 Score = 35.1 bits (77), Expect = 1.3
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 354 YKGSSIVPLPVVKPTIAVPVTP--TYVGSKVVTPTYVG 461
           +KG +IVPLP+VKP   V   P  T   S  + P +VG
Sbjct: 13  WKGPNIVPLPIVKPVPGVRTLPIRTQARSATILPNFVG 50


>UniRef50_UPI0000D56367 Cluster: PREDICTED: similar to CG30042-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG30042-PA - Tribolium castaneum
          Length = 275

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = +1

Query: 517 RXXNDVSAEGYHYLCETENKILG 585
           R    V  +GYHY+ ETENKILG
Sbjct: 180 RKEEQVEPDGYHYVYETENKILG 202


>UniRef50_A7FN62 Cluster: Pilus biogenesis protein; n=3;
           Yersinia|Rep: Pilus biogenesis protein - Yersinia
           pseudotuberculosis IP 31758
          Length = 356

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 324 EDLSKYLGDAYKGSSIVPLPVVKPTIAVPVTPTYVGSKVVTPTYV---GSKVVPPSGA 488
           ++L++  G+ + GSS   L  V PT+ VP+ PT     +  P+ V    SKV+ P+ A
Sbjct: 185 KNLAQQSGNPFSGSSASALTPVVPTLLVPLKPTIKPESISIPSPVLTEASKVLAPATA 242


>UniRef50_Q290D6 Cluster: GA15599-PA; n=1; Drosophila
           pseudoobscura|Rep: GA15599-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 264

 Score = 33.9 bits (74), Expect = 3.0
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 517 RXXNDVSAEGYHYLCETENKILGGRS 594
           R  +DV  +GYHYL ETEN IL   S
Sbjct: 168 RLEDDVEQDGYHYLYETENGILAEES 193


>UniRef50_UPI0000F1FF4E Cluster: PREDICTED: hypothetical protein;
           n=3; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 456

 Score = 33.1 bits (72), Expect = 5.3
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 351 AYKGSSIVPLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPSGAGC--DYKYGIIAXX 524
           A++  + +PLP  KP   +     Y   ++V  T    K +   G     D+ Y      
Sbjct: 166 AHRALAPIPLPTAKPRSIIVKFLNYRTKELVIKTAWAKKAIEWKGNRVFFDHDYAPDVLW 225

Query: 525 Q*RECRRLPLLVRDREQNSRWKKPARVK 608
           + REC+    +++D +   + + PAR+K
Sbjct: 226 KQRECQETKRMLKDHDIKFQMRFPARLK 253


>UniRef50_Q17GE7 Cluster: Tripartite motif protein trim2,3; n=2;
           Culicidae|Rep: Tripartite motif protein trim2,3 - Aedes
           aegypti (Yellowfever mosquito)
          Length = 1293

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 336 KYLGDAYKGSSIVPLPVVKPTIAVPVTPTYVGSKVVT 446
           K L D+ KG +    PV  PT+  PVTP  V  KV T
Sbjct: 448 KRLQDSEKGKTKKAAPVPTPTVPKPVTPVSVKPKVTT 484


>UniRef50_Q0W6D4 Cluster: Putative uncharacterized protein; n=1;
           uncultured methanogenic archaeon RC-I|Rep: Putative
           uncharacterized protein - Uncultured methanogenic
           archaeon RC-I
          Length = 427

 Score = 32.7 bits (71), Expect = 7.0
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 366 SIVPLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPSG 485
           ++ P P   PT+    TPT   +  VTPT   +    P G
Sbjct: 294 TVTPTPTATPTVTPTATPTVTPTPTVTPTVTPTPTATPRG 333


>UniRef50_A7MEY1 Cluster: Putative uncharacterized protein; n=2;
           Enterobacteriaceae|Rep: Putative uncharacterized protein
           - Enterobacter sakazakii ATCC BAA-894
          Length = 223

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 144 VYRTNGE-PVE*TRLYWKGVY-FPVSAASATVRDRQIAKKTRISRCY 10
           V RT G+ P +   LYW  +   P S   A V D QIA +TRI   Y
Sbjct: 86  VVRTGGDLPKDRESLYWLNIKSIPSSVKKAGVNDLQIAVRTRIKLMY 132


>UniRef50_P52172 Cluster: Box A-binding factor; n=3; Drosophila
           melanogaster|Rep: Box A-binding factor - Drosophila
           melanogaster (Fruit fly)
          Length = 1264

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 494 APGPAGWHHLAANVCGCHHLAANVCGCDWHGNGRLHDGQGNNAGS 360
           +PGPAG HH +++      +AA     + H N  L DG G+   S
Sbjct: 570 SPGPAGLHHSSSSAATAAAVAAATAAVNGH-NSSLEDGYGSPRSS 613


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,972,434
Number of Sequences: 1657284
Number of extensions: 12270352
Number of successful extensions: 38373
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 35077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38158
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)