Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31183
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    32   0.075
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   1.6  
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   1.6  
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo...    26   3.7  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   6.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    22   7.5  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   8.7  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.9 bits (69), Expect = 0.075
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 366  SIVPLPVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVP-PSGA 488
            S+   PV KP++AVP  P   G+  V    V +  VP PSGA
Sbjct: 1098 SVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 396  TIAVPVTPTYVGSKVV---TPTYVGSKVVPPSGA 488
            T+ V  T T  G+  V   TPT  GS+V+P +GA
Sbjct: 1119 TVTVTPTGTATGTTTVVINTPTTTGSEVLPTTGA 1152


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 141 KPGRYVTDPGRYDPSRDN 194
           KPG YV+D   Y P +DN
Sbjct: 235 KPGSYVSDRASYTPQQDN 252


>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 105 LYWKGVYFPVSAASATVRDRQIAKKTRISRCYEAN 1
           LYW G +F + A    +    I +  ++SR Y+A+
Sbjct: 126 LYWLGEFFGIQAKLFPLFQGSINENEKLSRYYQAS 160


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 118 RVNSVVLERSVLSSFGGQRHCQRQADCQKDTHFPL 14
           +VN  +L+R VL  FG Q   + +   +    FPL
Sbjct: 190 QVNGFLLDRFVLGGFGDQCDPEYRGSIENRCRFPL 224


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 375 PLPVVKPTIAVPVTPTYVGSKVVTPTYVGS 464
           P+  V PT A+P  P       V P+YV S
Sbjct: 173 PIGAVNPTSAIPAQPPAQPVNNVLPSYVRS 202


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 21.8 bits (44), Expect(2) = 7.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 410  SHTHIRWQQGG 442
            S+  IRWQQGG
Sbjct: 1114 SNITIRWQQGG 1124



 Score = 21.4 bits (43), Expect(2) = 7.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 452  IRWQQGGATQRG 487
            IRWQQGG    G
Sbjct: 1118 IRWQQGGLIGSG 1129


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 43  LPVSDSGAGRRNWKVHSFPVQPSLLYWFSIRSI 141
           L + DSG  R +W++  +   P LL+W    +I
Sbjct: 288 LKLIDSGK-RAHWRIQLYQSNPVLLHWLDEMTI 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,336,955
Number of Sequences: 5004
Number of extensions: 43013
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)