Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31183
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0488 - 10863248-10863960,10865933-10866269                       30   1.2  
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391...    29   2.9  
06_01_0336 + 2427017-2427121,2427585-2427662,2427889-2427960,242...    28   5.0  
07_01_0878 + 7288950-7289231                                           28   6.7  
05_03_0353 - 12856385-12857705,12858007-12858959                       28   6.7  
01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950     28   6.7  
03_05_0172 - 21488504-21488752,21488862-21489611,21489691-214897...    27   8.8  

>02_02_0488 - 10863248-10863960,10865933-10866269
          Length = 349

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
 Frame = +3

Query: 375 PLPVVKPTIAVPVTPTYVGSK-------VVTPTYVGSKVVPPSG 485
           P P   P +A P+ PTY+G         VV  +Y+G   VPP G
Sbjct: 234 PPPSTAPAVAAPLAPTYLGRPWKLYSRVVVMMSYIGGH-VPPEG 276


>04_04_1054 +
           30437468-30437763,30438647-30438779,30439099-30439159,
           30439370-30439483,30439813-30439971,30440124-30440206,
           30440423-30440549,30440872-30440951,30441027-30441113,
           30441316-30441440,30441543-30441603,30441806-30441859,
           30441946-30442023,30442449-30442554,30442655-30442803,
           30442945-30443052
          Length = 606

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +1

Query: 10  ITTGNACLFGNLPV----SDSGAGRRNWKVH 90
           ++TG  CL G+ PV      SG+G  NW VH
Sbjct: 250 VSTGAVCLDGSPPVYHFSPGSGSGANNWLVH 280


>06_01_0336 +
           2427017-2427121,2427585-2427662,2427889-2427960,
           2428105-2428671,2428822-2428935,2431308-2432246
          Length = 624

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 357 KGSSIVPLP--VVKPTIAVPVT--PTYVGSKVVTPT-YVGSKVVPPSGAGCDYKYGI 512
           K ++  P P  V+  TIA  +T  P++  +     T YVG K  PP+  G D K G+
Sbjct: 512 KAAAAAPPPPSVITDTIAKAITADPSFHTALAAAITSYVGKKGSPPASGGEDSKVGL 568


>07_01_0878 + 7288950-7289231
          Length = 93

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 84  FPVSAASATVRDRQIAKKTRISRCYEA 4
           FPVSA +  V  R++A   R+SRC  A
Sbjct: 52  FPVSAQAQMVVQRELAAVGRLSRCRSA 78


>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -2

Query: 419 GCDWHGNGRLHDGQGNNAGSLVSITKVFAEVL 324
           GC+W   G    GQ   A S VS T    E+L
Sbjct: 172 GCEWSDPGFFLRGQEEEASSSVSTTTAMEEIL 203


>01_06_1830 + 40194257-40194472,40195797-40196159,40196420-40196950
          Length = 369

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 512 DPVFVVAPGPAGWHHLAANVCGCHHL 435
           D V VVA  PA +HH  A    C+HL
Sbjct: 126 DHVLVVAVDPAAFHHCRAVHPHCYHL 151


>03_05_0172 -
           21488504-21488752,21488862-21489611,21489691-21489789,
           21489862-21490776,21490847-21490976,21491438-21491583,
           21491801-21491896,21492521-21492613,21492702-21492755,
           21492897-21492956,21493046-21493171,21493283-21493366,
           21493444-21493587,21493667-21493963
          Length = 1080

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 353 LQGIQHCSPARREAYHCRASHTHIRWQQGGD 445
           +QG Q  SP ++ +Y CR S   +  +Q  D
Sbjct: 215 IQGRQESSPEKQTSYQCRCSFLEVHNEQIND 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,371,431
Number of Sequences: 37544
Number of extensions: 378264
Number of successful extensions: 1106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)