Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31183
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical p... 29 3.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 29 3.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 29 3.4
L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell m... 28 4.5
L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell m... 28 4.5
L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell m... 28 4.5
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF077538-2|AAC64623.2| 175|Caenorhabditis elegans Hypothetical ... 28 6.0
Z54235-3|CAA90973.2| 288|Caenorhabditis elegans Hypothetical pr... 27 7.9
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 27 7.9
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 27 7.9
>Z12017-9|CAA78053.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 514 MIPYL*SHPAPLGGTTLLPTYVGVT 440
++P+L +P+ L G +LLPT +G++
Sbjct: 268 VLPFLGDNPSSLAGLSLLPTDIGIS 292
>Z11505-11|CAA77591.1| 537|Caenorhabditis elegans Hypothetical
protein R08D7.7 protein.
Length = 537
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -3
Query: 514 MIPYL*SHPAPLGGTTLLPTYVGVT 440
++P+L +P+ L G +LLPT +G++
Sbjct: 268 VLPFLGDNPSSLAGLSLLPTDIGIS 292
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 381 PVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPSGA 488
PV PT PVT T + + + TPT + V PS A
Sbjct: 556 PVTTPTSQPPVTTTSLLTTLTTPTVPVTTTVVPSSA 591
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 381 PVVKPTIAVPVTPTYVGSKVVTPTYVGSKVVPPSGA 488
PV PT PVT T + + + TPT + V PS A
Sbjct: 612 PVTTPTSQPPVTTTSLLTTLTTPTVPVTTTVVPSSA 647
>L10986-3|AAA28018.1| 650|Caenorhabditis elegans Abnormal cell
migration protein10, isoform b protein.
Length = 650
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 67 GRRNWKVHSFPVQPSLLYW 123
GR++WK H F ++PS LY+
Sbjct: 340 GRKSWKKHYFVLRPSGLYY 358
>L10986-2|AAK84523.2| 667|Caenorhabditis elegans Abnormal cell
migration protein10, isoform a protein.
Length = 667
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 67 GRRNWKVHSFPVQPSLLYW 123
GR++WK H F ++PS LY+
Sbjct: 357 GRKSWKKHYFVLRPSGLYY 375
>L10986-1|AAR25648.1| 779|Caenorhabditis elegans Abnormal cell
migration protein10, isoform c protein.
Length = 779
Score = 28.3 bits (60), Expect = 4.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 67 GRRNWKVHSFPVQPSLLYW 123
GR++WK H F ++PS LY+
Sbjct: 469 GRKSWKKHYFVLRPSGLYY 487
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -3
Query: 514 MIPYL*SHPAPLGGTTLLPTYVGVTTLLPTYVGVTGTAMVGFT 386
M+PY+ PA G T L Y+GV+T L Y+G+ M+ +
Sbjct: 89 MMPYV-FIPACAGFTVGLLPYLGVSTQLQGYIGIGCLGMLALS 130
>AF077538-2|AAC64623.2| 175|Caenorhabditis elegans Hypothetical
protein H02F09.2 protein.
Length = 175
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 475 GTTLLPTYVGVTTLLPTYVGVTGTAMVGFTTG 380
GTT+ PTY T++ VG T++ G TTG
Sbjct: 117 GTTIKPTYNNFKTVIGVLVG-GATSIPGLTTG 147
>Z54235-3|CAA90973.2| 288|Caenorhabditis elegans Hypothetical
protein C09G9.3 protein.
Length = 288
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -3
Query: 490 PAPLGGTTLLPTYVGVTTLLPT 425
P+P G TT PT TT++PT
Sbjct: 73 PSPTGSTTTDPTVTTTTTVVPT 94
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 374 SPARREAYHCRASHTHIRWQQGGD 445
+P A+H A H H +WQQ D
Sbjct: 395 APGVPPAWHAEAQHKHQQWQQQAD 418
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 374 SPARREAYHCRASHTHIRWQQGGD 445
+P A+H A H H +WQQ D
Sbjct: 560 APGVPPAWHAEAQHKHQQWQQQAD 583
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,025
Number of Sequences: 27780
Number of extensions: 275860
Number of successful extensions: 861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -