Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31182
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.1  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   3.7  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    26   5.0  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   6.5  
SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 276 KVLSLCAYVSGNYNIRENPNF 214
           K+ SLC ++  N NI  NP+F
Sbjct: 14  KIASLCNFLKFNKNIHSNPDF 34


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
 Frame = +3

Query: 108 PFFYT---SWRKFQRFTMPLAKALIMSRFGN 191
           P  YT   SW++FQR   PL   L++    N
Sbjct: 315 PLMYTRAESWKRFQRLLFPLCILLVLYLVSN 345


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 82   LTRVHKYTHHFFIRAGESFSDLQCHWQKR 168
            L+R+H    +F +  GE+  DL+   QKR
Sbjct: 1033 LSRLHDIPFYFVLLRGETLKDLKKRLQKR 1061


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 378 IVSYSCCPPLKAETHYCFTA 319
           +V Y  CP L +   +CF+A
Sbjct: 514 VVGYPACPLLTSRVRFCFSA 533


>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 328 AVMRFGFKGGAAAVTNYIETLKLISQ 405
           AV+ FG KGG       +  LKL SQ
Sbjct: 344 AVLSFGAKGGPDQSRKVVNALKLASQ 369


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,100
Number of Sequences: 5004
Number of extensions: 32987
Number of successful extensions: 62
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)