Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31180
         (672 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2D891 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q24IL3 Cluster: Cation channel family protein; n=1; Tet...    33   8.3  

>UniRef50_A2D891 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 418

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = +2

Query: 512 LKIFASNYSSDHQIFIISFN-GTRILNL--NNPLY 607
           LK+F  NYSSD++IF  S N   ++L++  NNPLY
Sbjct: 97  LKLFDENYSSDYKIFKDSLNEQNQLLSIFDNNPLY 131


>UniRef50_Q24IL3 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1850

 Score = 32.7 bits (71), Expect = 8.3
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 332 DYRVVVTLSTFGNFLFQHYLLRTIIEVN-AYV*VLHFVNCLRMNLVTG*SFSKNSNRLRK 508
           DY  +  +S  GNFL ++Y    +IE N     +L F   +  N +   SF +  N +R 
Sbjct: 444 DYDDIENISYIGNFLLKNY-FNELIETNKEKFLILAFQALIFENFI---SFVRIKNFIRN 499

Query: 509 RLKIFASNYSSDHQIFIISFNGTR 580
               F S+Y  ++Q+ I + N  +
Sbjct: 500 VANQFKSDYEEEYQMMINTCNNLK 523


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 549,516,236
Number of Sequences: 1657284
Number of extensions: 9758118
Number of successful extensions: 17738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17737
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51652897375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)