Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31180
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.3  
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa...    27   3.3  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   5.7  

>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 121 IRNLPKPQILNAKEFNVKSTYSHTKVIKIYYYSNIC 14
           +R L  PQ L  KE  VKS Y H K IK      IC
Sbjct: 754 VRALLTPQPL--KEMRVKSAYVHHKEIKAAMGVKIC 787


>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 349 YLIHIR*FSLSTLSFTNYNRSKCIRLSLALCQLFA 453
           + + I+ F +S ++F +Y+R +  R    LC +FA
Sbjct: 457 HALPIKIFEVSDVAFCDYSRERMTRNERHLCAIFA 491


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 302 LI*VDFSVLNDYRVVVTLSTFGNFLFQHYLLRTIIEV 412
           +I    + ++D+ V + +S   N +FQHY+    +++
Sbjct: 249 IITASLASMSDFPVALRISRILNIIFQHYVTSLTLDI 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,183
Number of Sequences: 5004
Number of extensions: 47255
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)