Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31179
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    29   0.48 
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   1.9  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   1.9  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   1.9  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   4.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   4.5  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   7.8  

>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = -3

Query: 450 LVQRLSS--STKYAASVNLVRTLVELEQVFFE*IGVRLPVVA 331
           L+Q +SS    K++ + NL  +++ L+QVF     ++LP VA
Sbjct: 596 LLQAISSIVENKFSQNPNLSYSIIRLQQVFLNLNSMKLPAVA 637


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 78  GLGKIPEFSWYSPLRTGYLPPFNSFYYPFAQRSNDYELHSEEELRRN 218
           G+ + P     S +   ++P  ++ Y P A   NDYEL  E E RR+
Sbjct: 499 GVYESPPHMSDSRISRQHMPLTHTTYEPSAPYYNDYELAEEIERRRH 545


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 102  SWYSPLRTGYLPPFNSFYYPFAQRSNDYELHSEEELRRNS 221
            S  SP+R+  L   N F   +    ND E+H  ++ +RNS
Sbjct: 1137 SLVSPIRS--LVSDNDFIQLYTSDKNDQEIHENKDSQRNS 1174


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 60  WERLTNGLGKIPEFSWYSPLRTGYLPPFNSFYYPFAQRSND 182
           WE L   +  + +F+W S    G L P    Y+P  +  ND
Sbjct: 784 WEHLYMKVQDVRKFNWLSMCTPGAL-PLTFSYFPSEEELND 823


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 343 QTNADLFEEDLLQFYQRSYEVNARRVLGAAAKP 441
           Q++ +LF+    QF +R ++V  RRV G   KP
Sbjct: 48  QSDFNLFDR---QFTKRKFDVGGRRVKGTEGKP 77


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 28  LLPATISSLLHGSVLPMDWVKSLSFPGTRL 117
           L+P+ +S    G VL +D    L  PGTRL
Sbjct: 275 LVPSLLSLDTEGRVLRLDSFSKLIAPGTRL 304


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 316 AVNFVGNY--WQTNADLFEEDLLQFYQRSYEVNARRVLGAAAKPLNQYTF 459
           A  F+G Y  W      F E  L +    +EV  + V  AAA+ L  + +
Sbjct: 491 ATLFLGRYTEWTAQHSEFLELQLNYISAGFEVANKEVQSAAAQALKHFCY 540


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 313 KAVNFVGNYWQTNADLFEEDLLQFYQRSYEVNARRVLG 426
           K +N   N W     LFE++L    +  ++V AR V G
Sbjct: 132 KILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQG 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,834
Number of Sequences: 5004
Number of extensions: 33826
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)