Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31179
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)                      33   0.092
SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)          27   8.0  

>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
          Length = 2352

 Score = 33.5 bits (73), Expect = 0.092
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 55   LHGSVLPMDWVKSLS-FPGTRLFELATSRLSTPFTIHLPKEAMTTSCTARKNYEEIRFLD 231
            LHG +L  D  K    FPG R    +T+   T  TI   K  + T       YEE R L+
Sbjct: 942  LHGKLLQEDQQKVFQQFPGKRKVVFSTNCAETSITIPGVKFVVDTGMAKEMKYEEKRGLN 1001

Query: 232  IYE 240
            I E
Sbjct: 1002 ILE 1004


>SB_27756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +3

Query: 93  PEFSWYSPLRTGYLPPFNSFYYPFAQRSNDYELHSEEELRRNSLP 227
           P +  Y P    Y PP+ S Y P  Q+ ND          +N  P
Sbjct: 477 PPYKSYQPPYKSYQPPYKS-YQPLHQQRNDQITEPSRPSHKNIQP 520


>SB_35683| Best HMM Match : Amino_oxidase (HMM E-Value=0.0092)
          Length = 729

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 322 NFVGNYWQTNADLFEEDLLQFYQRSYEVNA-RRVLGAAAKPLNQYT 456
           N  G  WQ+ ADL       F  R  ++N  +++L  A+K   +Y+
Sbjct: 249 NGTGGIWQSVADLLPRSWFHFENRVVQLNIDKKILTVASKDGAKYS 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,339
Number of Sequences: 59808
Number of extensions: 234931
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)