Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31179
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-6|CAA92029.1|  279|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical ...    28   4.0  
AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core alpha-6-...    27   7.0  
AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl trans...    27   7.0  

>Z68014-6|CAA92029.1|  279|Caenorhabditis elegans Hypothetical
           protein W04G3.7 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 60  WERLTNGLGKIPEFSWYSPLRTGYLP-PFNSFYYPFAQRSNDYELHSEEELRR 215
           W++ TN      +F+   P  T     P N +     QR  ++EL  E+E RR
Sbjct: 195 WQKFTNQNSWSSQFTIKPPTTTTTTESPLNYYLELLHQREREFELRKEQEARR 247


>AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical
           protein Y6E2A.5 protein.
          Length = 356

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
 Frame = +1

Query: 79  DWVKSLSFPGTRL---FELATSRLSTPFTIHLPKEAMTTSCTARKNYEEIRF-LDIYEKT 246
           DW+K    P  R+   F + +S+          +EA+     A++ Y  + F  ++ ++ 
Sbjct: 204 DWLKDTRAPLIRIKTKFTMFSSKWRRTDEDENKEEALYIQNLAQEAYYTLVFDFEMLQEL 263

Query: 247 FFQYLXQGHFKAFDKEIDLHSSKAVNFV 330
            ++YL +   K   K+I   ++K  NF+
Sbjct: 264 AYKYLDKLFLKVLQKQISQVATKLCNFI 291


>AJ512486-1|CAD54736.1|  559|Caenorhabditis elegans core
           alpha-6-fucosyltransferase protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +1

Query: 265 QGHFKAFDKEIDLHSSKAVNFVGNYWQ-----TNADLFEEDLLQFYQ 390
           + H    +KEIDL     V   GN+W      TN   ++E +   Y+
Sbjct: 498 EDHIAQNNKEIDLKVGDKVGIAGNHWNGYSKGTNRQTYKEGVFPSYK 544


>AF022968-8|AAN84870.1|  559|Caenorhabditis elegans Fucosyl
           transferase protein 8 protein.
          Length = 559

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = +1

Query: 265 QGHFKAFDKEIDLHSSKAVNFVGNYWQ-----TNADLFEEDLLQFYQ 390
           + H    +KEIDL     V   GN+W      TN   ++E +   Y+
Sbjct: 498 EDHIAQNNKEIDLKVGDKVGIAGNHWNGYSKGTNRQTYKEGVFPSYK 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,885,337
Number of Sequences: 27780
Number of extensions: 183577
Number of successful extensions: 488
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)