Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31176
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch...    27   1.8  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   5.5  
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos...    25   5.5  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   7.3  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    24   9.6  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    24   9.6  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    24   9.6  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    24   9.6  

>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 451 RSLKTCIYHARRWQERRQTEAQRGERRTSAS 359
           +++KT + H + W+  R  E +RG R  S S
Sbjct: 421 KNIKTPVIHWKDWKVIRNAEIERGLRHESLS 451


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
 Frame = -3

Query: 447 RLKPAY---ITRDDGKREDKQKPSEASEEHQRPVQKTRSGR 334
           R KP Y     R    R  + +  E SEE  RP+ + R+ R
Sbjct: 113 RSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSR 153


>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 316 VREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVSRDI 432
           + +G C+A    L    MFF  L G+ ++ SL I  RDI
Sbjct: 331 ITKGHCSA----LKADQMFFQLLDGVAYMHSLGIAHRDI 365


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 358 WTLMFFARLAGLLFVFSLAIVS 423
           W L F A + GLLF +   ++S
Sbjct: 88  WVLAFAAGIGGLLFGYDTGVIS 109


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 276 STPPPRPIATVDSSPG 323
           S PPP PI  +DS+ G
Sbjct: 122 SAPPPPPILPIDSAGG 137


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 297 SVSAGEYCGIILPRLLECGPARKNQVMRARANQ 199
           +++AG     I+ +LLECG     Q M +R  +
Sbjct: 567 NLAAGNSSASIVQQLLECGGTMGQQKMTSRIRE 599


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 233 RAGPHSSSRGRMMPQYSPAETD 298
           +AGP + ++GR  P+  P E+D
Sbjct: 167 KAGPIAIAQGRKAPRQDPDESD 188


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 17  YYDNTIHYRLLTN 55
           YYDNTI +R++ N
Sbjct: 490 YYDNTIFHRIIKN 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,736,148
Number of Sequences: 5004
Number of extensions: 32579
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)