Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31176
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29279| Best HMM Match : DoxX (HMM E-Value=8.6) 32 0.26
SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9) 32 0.26
SB_3319| Best HMM Match : Mak16 (HMM E-Value=7.4) 31 0.34
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 30 1.0
SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82) 29 1.4
SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034) 29 2.4
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 29 2.4
SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1) 27 5.6
SB_43875| Best HMM Match : DUF1542 (HMM E-Value=6.8) 27 5.6
SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079) 27 7.4
SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37) 27 7.4
SB_55522| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 27 9.7
SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08) 27 9.7
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 27 9.7
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 27 9.7
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_29279| Best HMM Match : DoxX (HMM E-Value=8.6)
Length = 196
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -1
Query: 440 NLHISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 261
NLH+ +R++ +R+P R ++++ + E A QS + T R + R S + SSC
Sbjct: 31 NLHVRLWLRSRQRESRAPNRPRPDLTLDESKPEGAWQSGTEPTERR--KRRFVSPLRSSC 88
Query: 260 HG 255
G
Sbjct: 89 RG 90
>SB_27440| Best HMM Match : DUF1707 (HMM E-Value=2.9)
Length = 916
Score = 31.9 bits (69), Expect = 0.26
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = -1
Query: 440 NLHISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 261
NLH+ +R++ +R+P R ++++ + E A QS + T R + R S + SSC
Sbjct: 639 NLHVRLWLRSRQRESRAPNRPRPDLTLDESKPEGAWQSGTEPTERR--KRRFVSPLRSSC 696
Query: 260 HG 255
G
Sbjct: 697 RG 698
>SB_3319| Best HMM Match : Mak16 (HMM E-Value=7.4)
Length = 204
Score = 31.5 bits (68), Expect = 0.34
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -2
Query: 412 QERRQTEAQRGERRTSASSTKDEKRPYSHLPGLLSTVAIGLGGGVLWH 269
+ RRQ +RGE +A KR +LP L VA+ L GG+L H
Sbjct: 78 RRRRQVLQRRGENALAALLPAVAKR---YLPALAKNVALPLAGGMLGH 122
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 29.9 bits (64), Expect = 1.0
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = -3
Query: 408 REDKQKPSEASEEHQRPVQKTR--SGRTVTFPDYYRP 304
++ ++K + E++ RP +K+R +G VT+P YY+P
Sbjct: 1034 QQAEEKSAYYYEKNSRPEEKSRPVNGLPVTYPTYYQP 1070
>SB_48094| Best HMM Match : MMR_HSR1 (HMM E-Value=0.82)
Length = 896
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/62 (32%), Positives = 28/62 (45%)
Frame = -2
Query: 454 HRSLKTCIYHARRWQERRQTEAQRGERRTSASSTKDEKRPYSHLPGLLSTVAIGLGGGVL 275
HR+ + + RRQ QRG +A KR +LP L VA+ L GG++
Sbjct: 637 HRNQLRTLATRKLASRRRQVLQQRGGNALAALLPAVAKR---YLPALAKNVALPLAGGMV 693
Query: 274 WH 269
H
Sbjct: 694 GH 695
>SB_42110| Best HMM Match : Pox_A32 (HMM E-Value=0.034)
Length = 720
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = -1
Query: 440 NLHISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 261
NLH+ + +R+P R ++++ + E A QS + +T R + R S + SSC
Sbjct: 534 NLHVRLWQRGATRESRAPNRPRPDLTLDESKPEGAWQSGTESTERR--KRRFVSPLRSSC 591
Query: 260 HG 255
G
Sbjct: 592 RG 593
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 28.7 bits (61), Expect = 2.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 321 PDYYRP*LSVSAGEYCGIILPRLLEC 244
P YY + GEY G++LP LL C
Sbjct: 1136 PRYYVAASQLVQGEYTGVLLPELLVC 1161
>SB_26155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 321 PDYYRP*---LSVSAGEYCGIILPRLLECGPARKNQVMRARANQEPTRGRVIAGDAGLLR 151
P Y+ P + V+AGEY ++P+L++ + R R + E + G ++GD+ + +
Sbjct: 444 PKYHNPADFIIEVAAGEYGEDVIPKLVKAWHVHMAEEKR-RKSLEMSPGSDVSGDSSVSK 502
Query: 150 RQSAT 136
+ T
Sbjct: 503 SSTVT 507
>SB_34768| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1190
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 420 DDGKREDKQKPSEASEEHQRPVQKT 346
D RE + K EASEE+ RP++ T
Sbjct: 967 DYENRERRDKGDEASEENNRPIRST 991
>SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 409 ERRQTEAQRGERRTSASSTKDEKRPYSHL 323
+RR + + ERRT ++ T+ + YSHL
Sbjct: 205 KRRSKKTRSPERRTMSAKTRSQNDEYSHL 233
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 407 EKTNRSPARRAKNISV-QYKRREAAVQSPSRTTIDRSYRSR 288
EK+ ++ +R K S+ + KRR +SP R T+ RS+
Sbjct: 186 EKSPKADRKRPKTTSLDELKRRSKKTRSPERRTMSAKTRSQ 226
>SB_45106| Best HMM Match : Adeno_E3B (HMM E-Value=1.1)
Length = 234
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = -1
Query: 137 QSLVLIARFSLIIVNSYIC*SFVLCLVNLLIICSVSCC 24
QSLVL ++I++ S + SF+L ++ L+ C+ +CC
Sbjct: 45 QSLVLYGS-AIIVIGSVV--SFLL-FIHFLVFCAATCC 78
>SB_43875| Best HMM Match : DUF1542 (HMM E-Value=6.8)
Length = 173
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 27 TRYTTDY*QINETQNKRLTNI*IYNNERETRD 122
TR + +I +T NKR T + NN R+TRD
Sbjct: 3 TRDPVNNREIRDTVNKRDTRDPVNNNNRDTRD 34
>SB_5248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1311
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -3
Query: 429 ITRDDGKREDKQKPSEASEEHQRPVQKTRS 340
+TRDD ++K + S EH++ +KT++
Sbjct: 856 LTRDDKATHSRKKSKKKSVEHEKNAEKTQA 885
>SB_44638| Best HMM Match : TFIIB (HMM E-Value=0.0079)
Length = 472
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Frame = -2
Query: 436 CIYHARRWQERRQTEAQRGE------RRTSASSTKDEKRPYSHLPGL 314
CIY+A + + R++ AQ+GE R + SS + RP S L
Sbjct: 381 CIYYAYKMSDSRRSPAQKGEVVQLYYRSKNRSSELNRARPQSFAAAL 427
>SB_15501| Best HMM Match : Not1 (HMM E-Value=4.6e-37)
Length = 509
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 137 VADCRRSSPASPAITRPRVGS*LARARIT*FL---RAGPHSSSRGRMM 271
+AD + +P + A+ RP V LARA + + A H+S+ GR +
Sbjct: 349 IADVQHRAPRTQAVARPWVRICLARAHFSQAVYVQAAAQHASAEGRYL 396
>SB_55522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 27.1 bits (57), Expect = 7.4
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = -1
Query: 434 HISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHG 255
H SR +E+ N ARR + R + + SP RT RG+T G
Sbjct: 113 HSSRNRN-KERANNMAARRIETKDKDKGNRTSPISSPGRTLFASISGLPRGTTPEYLPEG 171
Query: 254 YLSADL 237
+ DL
Sbjct: 172 FTPGDL 177
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.1 bits (57), Expect = 7.4
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -1
Query: 89 YIC*SFVLCLVNLLIICS 36
Y+C + V+CL+N+L+ C+
Sbjct: 871 YLCGNMVMCLLNMLLSCA 888
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 438 PAYITRDDGKREDKQKPSEASEEHQRPVQKTRSGRTVTFP 319
P+ IT D K + EAS ++ RP S ++ T P
Sbjct: 341 PSPITDDSSKTATYSRLPEASSDNSRPESPAESSKSPTSP 380
>SB_44513| Best HMM Match : Acetyltransf_1 (HMM E-Value=2.7e-08)
Length = 573
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 234 RKNQVMRARANQEPTRGRVIAGDAGLLRRQSATKPRTD-RAFLSH 103
RK +R +N PT+ R+I D + S KP D R SH
Sbjct: 93 RKASEIRTGSNPSPTKSRIIKDDLNEI-APSVVKPVADARGIFSH 136
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 26.6 bits (56), Expect = 9.7
Identities = 23/80 (28%), Positives = 33/80 (41%)
Frame = -1
Query: 428 SRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYL 249
SR +RS + R+K KRR + +SP R S R RR + + S L
Sbjct: 272 SRSHRKHRSHSRSRSPRSKRSRSPRKRRRSKSRSPRRYRDSSSCRRRRSRSRSRSPKSRL 331
Query: 248 SADLRARIR*CVRAPIRSQR 189
+ R+ R R+ R R
Sbjct: 332 RSRSRSPYRIRYRSRSRPPR 351
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 26.6 bits (56), Expect = 9.7
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 417 DGKREDKQKPSEASEEHQRPVQKTRSGRT 331
D K++ K K + EE + +KT+ G+T
Sbjct: 857 DNKKKGKSKKDDEDEEAEEDGEKTKKGKT 885
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 424 ARRWQERRQTEAQRGERRTSASSTKDEKRPYSHLPGLLSTVA 299
++R + R++ + TS ++T K P+S L LST+A
Sbjct: 62 SKRRKRRKKKKRTEPPTVTSGTNTNMTKSPFSSLSNALSTIA 103
>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 26.6 bits (56), Expect = 9.7
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 331 SHLPGLLSTVAIGLGGGVLWHHPATAT*VRTCAQESGDACAR 206
+H +L AI LGG V+ T + TCA E+ CAR
Sbjct: 361 THTLDILQKCAIKLGGEVVDEFSTKVTHIITCANEN-RVCAR 401
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,329
Number of Sequences: 59808
Number of extensions: 279601
Number of successful extensions: 1380
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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