Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31176
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical pr...    27   4.9  
AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin prote...    27   4.9  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   6.5  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    27   6.5  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    27   6.5  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.5  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   6.5  
U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U39741-2|AAQ81278.1|  279|Caenorhabditis elegans Hypothetical
           protein F12D9.1b protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 113 FSLIIVNSYIC*SFVLCLVNLLIICSV 33
           ++L    +YIC S +LC+  L+++C V
Sbjct: 204 YTLFSSITYICGSIILCIAVLMVVCVV 230


>U39741-1|AAA80429.2|  301|Caenorhabditis elegans Hypothetical
           protein F12D9.1a protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 113 FSLIIVNSYIC*SFVLCLVNLLIICSV 33
           ++L    +YIC S +LC+  L+++C V
Sbjct: 226 YTLFSSITYICGSIILCIAVLMVVCVV 252


>U40953-6|AAB52651.1|  809|Caenorhabditis elegans Hypothetical
           protein F53B1.8 protein.
          Length = 809

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 304 RSIVVREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVS 423
           R  +V++G C      L W L+ FA L+   F  ++ I+S
Sbjct: 658 RPRIVKKGVCEPQCTELLWFLLLFAPLSFCTFAIAVPIIS 697


>Z81081-1|CAB03090.1|  464|Caenorhabditis elegans Hypothetical
           protein F42D1.2 protein.
          Length = 464

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 145 LPAQQPGVTCDNAAARWLLIGARTHHLIL 231
           L  + P +TCD  A RW++ G R   LI+
Sbjct: 270 LSPKVPIITCDGIAKRWMVPGWRLGWLII 298


>AF068716-8|AAC17749.1|  554|Caenorhabditis elegans Innexin protein
           4 protein.
          Length = 554

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 352 LYWTLMFFARLAGLLFVFSLAIVSRDICRF 441
           L++TL+F A    +L+ FS+++  RD  RF
Sbjct: 326 LWFTLLFVASTLDMLYWFSISMFHRDRFRF 355


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 310  STVAIGLGGGVLWHHP 263
            +TV  G GG  LWHHP
Sbjct: 3546 TTVESGSGGEELWHHP 3561


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 310  STVAIGLGGGVLWHHP 263
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 310  STVAIGLGGGVLWHHP 263
            +TV  G GG  LWHHP
Sbjct: 1392 TTVESGSGGEELWHHP 1407


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
 Frame = -1

Query: 428 SRETMAREKTNRSPARRAKNISVQYK-----RREAAVQSPSRTTIDRSYRSRRGSTVASS 264
           S  + +R K  +S +RR+++ S   +     RR +  +S  R T  R   SR      S 
Sbjct: 34  SNRSRSRSKDRKSSSRRSRSRSRDRRGDRGDRRRSRSRSKDRRTTRRRSPSRERRRSRSR 93

Query: 263 CHGYLSADLRARIR*CVRAPIRSQRAAALSQVTPGCCAGSPPQS 132
             G      R R R   R+P R +      + +PG    SPP+S
Sbjct: 94  DRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRSPG--RRSPPRS 135


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 310  STVAIGLGGGVLWHHP 263
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 310  STVAIGLGGGVLWHHP 263
            +TV  G GG  LWHHP
Sbjct: 3578 TTVESGSGGEELWHHP 3593


>U97408-3|AAB93343.1|  339|Caenorhabditis elegans Hypothetical
           protein F48A9.1 protein.
          Length = 339

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 450 DRLKPAYITRDDGKREDKQKPSEASEEHQRPVQKTRSGRTVT 325
           DR K     RD+ KRE++Q  +     H+R     R   +V+
Sbjct: 220 DRRKDTEELRDERKRENEQNQNRERYHHRRSKSSNRDDASVS 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,111
Number of Sequences: 27780
Number of extensions: 196483
Number of successful extensions: 817
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)