Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31176
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30470.1 68415.m03711 transcriptional factor B3 family protei... 33 0.069
At5g06040.1 68418.m00669 self-incompatibility protein-related 30 0.65
At2g29410.1 68415.m03574 zinc transporter, putative similar to z... 29 1.5
At5g31873.1 68418.m03777 hypothetical protein 29 2.0
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 28 2.6
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 28 2.6
At5g44290.1 68418.m05421 protein kinase family protein contains ... 27 4.5
At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding protei... 27 4.5
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 27 4.5
At2g22795.1 68415.m02704 expressed protein 27 4.5
At3g23380.1 68416.m02948 p21-rho-binding domain-containing prote... 27 6.0
At2g46380.1 68415.m05773 hypothetical protein weak similarity to... 27 6.0
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 27 7.9
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 27 7.9
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 27 7.9
At2g28540.1 68415.m03467 expressed protein 27 7.9
>At2g30470.1 68415.m03711 transcriptional factor B3 family protein
low similarity to FUSCA3 [Arabidopsis thaliana]
GI:3582518; contains Pfam profile PF02362: B3 DNA
binding domain
Length = 790
Score = 33.5 bits (73), Expect = 0.069
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +2
Query: 161 PASPAITRPRVGS*LARARIT*FLRAGPHSSSRGRMMPQYSPAETDSYGR**SGKVTVRP 340
P+ PAI+ P V S A+ARI R RG ++P+Y P TD + SG + +
Sbjct: 235 PSRPAISTPPVASKSAQARIG---RPPVEGRGRGHLLPRYWPKYTDKEVQQISGNLNLNI 291
Query: 341 LLVF 352
+ +F
Sbjct: 292 VPLF 295
>At5g06040.1 68418.m00669 self-incompatibility protein-related
Length = 111
Score = 30.3 bits (65), Expect = 0.65
Identities = 11/27 (40%), Positives = 21/27 (77%)
Frame = -1
Query: 110 SLIIVNSYIC*SFVLCLVNLLIICSVS 30
S+I +NSY+C F++ +V + +ICS++
Sbjct: 5 SIINLNSYVCSIFIMSIVVISLICSLA 31
>At2g29410.1 68415.m03574 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 375
Score = 29.1 bits (62), Expect = 1.5
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 412 QERRQTEAQRGERRTSASSTKDEKRPYSH-LPGLLSTVAIGLGGGVLWHHP 263
+E + +GE+ +S + + Y H + ++ ++ + +GGG++W P
Sbjct: 213 EEEEEMNPLKGEKSSSKEMNINIQGAYLHAMADMIQSLGVMIGGGIIWVKP 263
>At5g31873.1 68418.m03777 hypothetical protein
Length = 271
Score = 28.7 bits (61), Expect = 2.0
Identities = 23/78 (29%), Positives = 28/78 (35%)
Frame = -3
Query: 357 VQKTRSGRTVTFPDYYRP*LSVSAGEYCGIILPRLLECGPARKNQVMRARANQEPTRGRV 178
+ + G VTF R +S GEY L R+L GP + V R
Sbjct: 43 IAQRMQGTDVTFRKDARNGCDLSEGEYNSTELMRMLPSGPTVRWSVEDGEDRSSDGSARP 102
Query: 177 IAGDAGLLRRQSATKPRT 124
I G RR T RT
Sbjct: 103 IVRRIGSARRIGQTDRRT 120
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 28.3 bits (60), Expect = 2.6
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -1
Query: 413 AREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYLSADLR 234
+R R P RR+ S ++ +S SR+ I S RS S S + +R
Sbjct: 506 SRGSLGRGPLRRSSRRSPSRSPVRSSRRSLSRSPIQLSRRSLSRSPTRLSRRSLSRSPIR 565
Query: 233 ARIR*CVRAPIRSQR 189
+ + R+P+RS R
Sbjct: 566 SPRKSVSRSPVRSSR 580
Score = 26.6 bits (56), Expect = 7.9
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = -1
Query: 398 NRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSR--RGSTVASSCHGYLSADLRARI 225
+RSP R K + + R +SPSR+ + + R RG SS + +R+
Sbjct: 473 SRSPLRSPKRVISRSPVRGRIARSPSRSPVRSASRGSLGRGPLRRSSRRSPSRSPVRSSR 532
Query: 224 R*CVRAPIRSQR 189
R R+PI+ R
Sbjct: 533 RSLSRSPIQLSR 544
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 28.3 bits (60), Expect = 2.6
Identities = 9/25 (36%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = -2
Query: 334 YSHLPG-LLSTVAIGLGGGVLWHHP 263
Y H+ G L+ ++ + +GGG++W++P
Sbjct: 199 YLHVLGDLIQSIGVMIGGGMIWYNP 223
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 27.5 bits (58), Expect = 4.5
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Frame = -3
Query: 423 RDDGKREDKQKPSEASEEHQRPVQKTR-SGRTVTFPDYYRP*LSVSAGEYCGIILPRLLE 247
RDD KR Q+P++ E+H+R +TR S P S+S + P L
Sbjct: 447 RDDAKR---QRPTQ--EKHERQDSQTRRSHERKLIPPVKANNPSLSTA----VENPYLRS 497
Query: 246 CGPARKNQVMRARANQEPTRGRV 178
C P + M+ PT GRV
Sbjct: 498 CVPGNSQRQMQDMTCNNPTSGRV 520
>At3g25700.1 68416.m03198 chloroplast nucleoid DNA-binding
protein-related contains weak similarity to CND41,
chloroplast nucleoid DNA binding protein (GI:2541876)
[Nicotiana tabacum]
Length = 452
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 215 VRAPIRSQRAAALSQVTPGCCAGSPPQSLVLIA 117
V++P+ S A+ Q G PPQSL+LIA
Sbjct: 69 VKSPVVSGAASGSGQYFVDLRIGQPPQSLLLIA 101
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 426 TRDDGKREDKQKPSEASEEHQRPVQKTRSGRTVT 325
T DDG R+ PS+ SE P + R+VT
Sbjct: 624 TTDDGLRQSSDDPSKGSEGQTPPGESRTPPRSVT 657
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = -1
Query: 425 RETMAREKTNRSPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGS 279
+ET +EK S +N++ + +++E ++ +T D S S+ S
Sbjct: 618 KETETKEKEESSSNESQENVNTESEKKEQVEENEKKTDEDTSESSKENS 666
>At3g23380.1 68416.m02948 p21-rho-binding domain-containing protein
contains Pfam PF00786: P21-Rho-binding domain
Length = 193
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -3
Query: 441 KPAYITRDDGKREDKQKPSEASEEHQRPVQKTRSG 337
KP T+ + K +KP + E+H++ +KT +G
Sbjct: 58 KPTDQTKTETKGTSNKKPGSSGEKHRKGRRKTSTG 92
>At2g46380.1 68415.m05773 hypothetical protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 732
Score = 27.1 bits (57), Expect = 6.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 405 EDKQKPSEASEEHQRPVQKTRSGRTVTFPDYYR 307
+++Q PS +S + P++ SGR + P YY+
Sbjct: 171 KEQQIPSSSSGFQKAPLRVFSSGRRIAGPSYYQ 203
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 26.6 bits (56), Expect = 7.9
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 406 RRQTEAQRGERRTSASSTKDEKRPY 332
+RQ +G +TS+SS+KDE +PY
Sbjct: 365 QRQGVNVQGLVKTSSSSSKDEPKPY 389
>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 434 HISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSR 318
HI + +E RSP + N+ +Q K + AAV SPSR
Sbjct: 655 HIQKPESPKE---RSPVSKDPNM-IQMKEKSAAVLSPSR 689
>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 26.6 bits (56), Expect = 7.9
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -1
Query: 434 HISRETMAREKTNRSPARRAKNISVQYKRREAAVQSPSR 318
HI + +E RSP + N+ +Q K + AAV SPSR
Sbjct: 655 HIQKPESPKE---RSPVSKDPNM-IQMKEKSAAVLSPSR 689
>At2g28540.1 68415.m03467 expressed protein
Length = 655
Score = 26.6 bits (56), Expect = 7.9
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = -1
Query: 389 PARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYLSADL 237
P+ + S QYK A +RT SY RGS +A +GY L
Sbjct: 246 PSNCMQPCSSQYK----AEHDETRTVFGSSYSDSRGSNIAPISNGYTEMPL 292
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,368,753
Number of Sequences: 28952
Number of extensions: 185037
Number of successful extensions: 696
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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