Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31169
         (607 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein ...    29   3.7  
AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein ...    29   3.7  
BT015305-1|AAT94533.1| 1256|Drosophila melanogaster AT15166p pro...    28   8.6  
AY058520-1|AAL13749.1| 1256|Drosophila melanogaster LD22771p pro...    28   8.6  
AE014297-1371|AAN13524.1| 1256|Drosophila melanogaster CG6923-PB...    28   8.6  
AE014297-1370|AAF54693.1| 1256|Drosophila melanogaster CG6923-PA...    28   8.6  

>AY561850-1|AAS68533.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 587 IIKKKN*RSQKNTIEKHPYLFKSLKIMAVNVNQVILIAVKYEAIQNACLGNAIPLHLH 414
           +I+K N ++  N+      L  +++I A  ++        Y+AIQN  LG  IPLH H
Sbjct: 575 LIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDA-------YKAIQNVLLGANIPLHSH 625


>AJ566116-1|CAD92792.1|  970|Drosophila melanogaster gag protein
           protein.
          Length = 970

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = -3

Query: 587 IIKKKN*RSQKNTIEKHPYLFKSLKIMAVNVNQVILIAVKYEAIQNACLGNAIPLHLH 414
           +I+K N ++  N+      L  +++I A  ++        Y+AIQN  LG  IPLH H
Sbjct: 575 LIEKLNYKAGVNSFTTKSELGNNIRIQAKTMDA-------YKAIQNVLLGANIPLHSH 625


>BT015305-1|AAT94533.1| 1256|Drosophila melanogaster AT15166p protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 197  VLYTSLIKHPRF-IHLDGWLQITGSESHKRRRHVSPSTRGHNLNANISTSTIR 352
            ++ TSL   P + +H + W +   S     RRH++P+    + NA + TST+R
Sbjct: 976  IVATSLTPAPPYPVHQNLWYR-QQSMQEMHRRHMTPTPIDLSSNAPLLTSTLR 1027


>AY058520-1|AAL13749.1| 1256|Drosophila melanogaster LD22771p protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 197  VLYTSLIKHPRF-IHLDGWLQITGSESHKRRRHVSPSTRGHNLNANISTSTIR 352
            ++ TSL   P + +H + W +   S     RRH++P+    + NA + TST+R
Sbjct: 976  IVATSLTPAPPYPVHQNLWYR-QQSMQEMHRRHMTPTPIDLSSNAPLLTSTLR 1027


>AE014297-1371|AAN13524.1| 1256|Drosophila melanogaster CG6923-PB,
            isoform B protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 197  VLYTSLIKHPRF-IHLDGWLQITGSESHKRRRHVSPSTRGHNLNANISTSTIR 352
            ++ TSL   P + +H + W +   S     RRH++P+    + NA + TST+R
Sbjct: 976  IVATSLTPAPPYPVHQNLWYR-QQSMQEMHRRHMTPTPIDLSSNAPLLTSTLR 1027


>AE014297-1370|AAF54693.1| 1256|Drosophila melanogaster CG6923-PA,
            isoform A protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +2

Query: 197  VLYTSLIKHPRF-IHLDGWLQITGSESHKRRRHVSPSTRGHNLNANISTSTIR 352
            ++ TSL   P + +H + W +   S     RRH++P+    + NA + TST+R
Sbjct: 976  IVATSLTPAPPYPVHQNLWYR-QQSMQEMHRRHMTPTPIDLSSNAPLLTSTLR 1027


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,671
Number of Sequences: 53049
Number of extensions: 337633
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)