Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31169
         (607 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26680.1 68415.m03200 expressed protein similar to NLPE1 (GI:...    28   4.2  
At1g51055.1 68414.m05739 hypothetical protein                          27   9.6  

>At2g26680.1 68415.m03200 expressed protein similar to NLPE1
           (GI:13022100) [Rhizobium etli];
          Length = 319

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 537 MFLNCVFLTSLIFFFNNESL 596
           + L+ +FL+SL FFF+N SL
Sbjct: 23  LVLSIIFLSSLFFFFSNSSL 42


>At1g51055.1 68414.m05739 hypothetical protein
          Length = 161

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 279 LWLSEPVICNQPSKWMNL-GCLMSDV*STYVLKIRLYK 169
           ++L    +C   ++W NL  C++ D     VLK++LY+
Sbjct: 35  VYLDHLELCLCSTEWWNLLTCILDDAPKLRVLKLKLYR 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,813,356
Number of Sequences: 28952
Number of extensions: 156118
Number of successful extensions: 366
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)