Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31167
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    21   7.1  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.3  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.3  

>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 609 QKLGTGVYCFMHV*TTSQFSAHDL 538
           QKL  G+  + H  T    S HDL
Sbjct: 248 QKLAIGIAFYGHAFTLVDASQHDL 271


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 393 CHEFCHKIQSC 425
           C  FCH+  SC
Sbjct: 12  CDNFCHRYISC 22


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 393 CHEFCHKIQSC 425
           C  FCH+  SC
Sbjct: 168 CDNFCHRYISC 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,239
Number of Sequences: 336
Number of extensions: 3842
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)