Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31167
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    28   1.4  
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    27   2.5  
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|...    26   5.8  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   5.8  

>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
 Frame = +1

Query: 370 ILDYSDVNVMNFVTKFNPVILRQAGTLITDGYGMRIKGVYII*PSKTVDLILNLFKQVVS 549
           I+D   V + +  + ++   +RQA ++  D Y  R+   Y+I          NL K  + 
Sbjct: 171 IMDLKGVGITSIHSVYS--YIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGFLD 228

Query: 550 TKLASRLHV--HKTIDTGTEFLDKDLLPIEYGGN 645
                ++H+          E +  D LP + GGN
Sbjct: 229 EATVKKIHILGSNYKSALLEQIPADNLPAKLGGN 262


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 133 RLKR*CRISSKT*TLRNLHFPPFSHTRICRN*PRITNRIYILKVYNDDF 279
           R  R CRI +K+ TL    FP  +      N  +I NR Y  K+ ND F
Sbjct: 41  RNSRSCRIDAKSNTLTKEIFPKIN------NEFKIKNRFYSSKLANDQF 83


>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 242 TEYIY*KFTTMILTLPSSWTITSTLW 319
           TEYI      + L  P+S+TI++ LW
Sbjct: 95  TEYILGGCAVLALIYPTSYTISNILW 120


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 580 KTIDTGTEFLDKDLLPIEYGGNGTISKGIHNEWL 681
           K I+ GT F    + P+E G NG+ +   H  WL
Sbjct: 533 KGINLGT-FAKLTIAPLELGDNGSSNHYSHRVWL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,024,623
Number of Sequences: 5004
Number of extensions: 64461
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)