Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31167
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0537 + 18410201-18410207,18410301-18410586,18410674-184107... 37 0.017
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 36 0.039
08_02_0190 - 14037655-14038044,14038053-14038436 33 0.28
02_03_0349 + 18010414-18014283 32 0.37
01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617... 31 0.84
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 30 2.0
05_01_0062 + 440239-440325,441107-441183,441416-441643,441953-44... 29 4.5
>09_04_0537 +
18410201-18410207,18410301-18410586,18410674-18410773,
18410881-18411147,18411286-18411363,18411444-18411545,
18411628-18411677,18411793-18411889,18412248-18412361,
18412495-18412666,18412865-18413217,18413812-18413898,
18413981-18414001
Length = 577
Score = 36.7 bits (81), Expect = 0.017
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Frame = +1
Query: 370 ILDYSDVNVMNFVTKFNPVILRQAGTLITDGYGMRIKGVYII*PSKTVDLILNLFKQVVS 549
ILD V + NF +K ++ + + +D Y + +Y++ LI N K +
Sbjct: 214 ILDVHGVGLKNF-SKTARELVHRMQKIDSDYYPETLHQMYVVNAGSGFKLIWNSVKGFLD 272
Query: 550 TKLASRLHVHKTIDTG--TEFLDKDLLPIEYGGNGTISKG 663
K +S++HV T E +DK LP GG+ T S+G
Sbjct: 273 PKTSSKIHVLGTNYQSRLLEVIDKSELPEFLGGSCTCSEG 312
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 35.5 bits (78), Expect = 0.039
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Frame = +1
Query: 370 ILDYSDVNVMNFVTKFNPVILRQAGTLITDGYGMRIKGVYII*PSKTVDLILNLFKQVVS 549
ILD V + NF +I R + D Y ++ +YII + ++ + K +
Sbjct: 334 ILDVQGVGLKNFSKAARDLITRLQ-KIDNDNYPETLRRMYIINAGQGFKMLWSTVKSFLD 392
Query: 550 TKLASRLHV--HKTIDTGTEFLDKDLLPIEYGG 642
K AS++HV K + E +D++ LP +GG
Sbjct: 393 PKTASKIHVLGSKYQNKLLEIIDENELPEFFGG 425
>08_02_0190 - 14037655-14038044,14038053-14038436
Length = 257
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 447 CTRLT*NNRI-EFCDKIHDIHVAVVKYYFKTFAVIMNFKVFAHNHNVLVIVQDEGSVKII 271
CT + N RI C + IHV +KY+ + F+++AH + L + + ++ I
Sbjct: 104 CTLIRENGRITRQCQSLPSIHVIYLKYHRNVTCAFVAFEMYAHVIDNLT-YEPKSIIQHI 162
Query: 270 VVNF*YIYSVSYPW 229
F Y S + W
Sbjct: 163 AETFKYTISYAKAW 176
>02_03_0349 + 18010414-18014283
Length = 1289
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/48 (39%), Positives = 30/48 (62%)
Frame = -1
Query: 259 LIYIFG*LSLVSFGICACEKTVENANFLTSMSSKKFGISVLNVHKLSI 116
LI I G SL+S I +C+K VE+++ L+ + G+S LN+ +L I
Sbjct: 1119 LIGIQGLASLMSLTIASCDKLVEDSSILSPEDADSSGLS-LNLSELDI 1165
>01_06_0403 -
29060712-29060732,29061260-29061334,29061596-29061762,
29061841-29061996,29062412-29062535,29062949-29063047,
29063155-29063254,29063331-29063380,29063461-29063562,
29063709-29063786,29063865-29064131,29064225-29064321,
29064446-29064746,29066714-29066805,29066890-29067005,
29067445-29067519,29067846-29067911,29068206-29068262,
29068381-29068430,29068518-29068688,29068969-29069060,
29069124-29069281
Length = 837
Score = 31.1 bits (67), Expect = 0.84
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Frame = +1
Query: 370 ILDYSDVNVMNFVTKFNPVILRQAGTLITDGYGMRIKGVYII*PSKTVDLILNLFKQVVS 549
ILD V + NF +I+R + D Y + +YII + ++ K +
Sbjct: 508 ILDVQGVGLKNFSKDARELIMRLQ-KINNDNYPETLHRLYIINAGQGFKMLWGTIKSFLD 566
Query: 550 TKLASRLHV--HKTIDTGTEFLDKDLLPIEYGG 642
+ AS++HV K + E +D+ LP GG
Sbjct: 567 PQTASKIHVLGSKYQNKLLETIDESELPDFLGG 599
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +1
Query: 370 ILDYSDVNVMNFVTKFNPVILRQAGTLITDGYGMRIKGVYII*PSKTVDLILNLFKQVVS 549
ILD V + NF +I+R + D Y + ++I+ L+ N K +
Sbjct: 227 ILDVQGVGLKNFSKTARELIVRLQ-KIDNDNYPETLYQMFIVNAGPGFRLLWNTVKSFLD 285
Query: 550 TKLASRLHV--HKTIDTGTEFLDKDLLPIEYGG 642
K S++HV +K E +D LP GG
Sbjct: 286 PKTTSKIHVLGNKYQSKLLEVIDASELPEFLGG 318
>05_01_0062 +
440239-440325,441107-441183,441416-441643,441953-442176,
442250-442398,443102-443279,443348-443428,443523-443669,
443759-444483
Length = 631
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 268 NDDFDASLVLDYYKYIVVVSEYLKIHDYCKGFEV 369
+DD+ ++ YY ++ VV K D +G EV
Sbjct: 34 HDDYQLDRIISYYHHVFVVLSSYKAFDQLEGLEV 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,680,852
Number of Sequences: 37544
Number of extensions: 376505
Number of successful extensions: 807
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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