Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31167
(682 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 33 0.21
SB_23472| Best HMM Match : HIT (HMM E-Value=0.43) 29 3.5
SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028) 29 3.5
SB_53096| Best HMM Match : PHD (HMM E-Value=0.001) 29 3.5
SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 29 3.5
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.5
SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031) 29 4.6
SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.6
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41) 29 4.6
SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07) 28 6.1
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +1
Query: 541 VVSTKLASRLHVHK--TIDTGTEFLDKDLLPIEYGGNGTISKGIH 669
+ T+ SRLH + TID G D L ++ G NG +S G+H
Sbjct: 1382 IPDTEWGSRLHFSEALTIDCGKTMELDDALSVKAGANGVVSVGVH 1426
>SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)
Length = 168
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 16 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 52
>SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)
Length = 252
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 61 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 97
>SB_53096| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 623
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 545 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 581
>SB_49562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 734
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 150 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 186
>SB_29292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 660 PVFKKGNKNIPSNYRPISLTAVPCKILKHIIFHDIMN 696
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 475 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 511
>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 979
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLVLTTCLN 531
P + GNK++ N P+S+ CK L +++ +N
Sbjct: 101 PVFKKGNKNIPSNYRPISLTAVPCKILEHIIFHDIMN 137
>SB_53427| Best HMM Match : RVT_1 (HMM E-Value=0.031)
Length = 969
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 626 GNKSLSKNSVPVSIVLCTCKRLANLV 549
GNKSL+ N P+S+ TCK + +++
Sbjct: 725 GNKSLASNYRPISLTSITCKIMEHIL 750
>SB_46139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 626 GNKSLSKNSVPVSIVLCTCKRLANLV 549
GNKSL+ N P+S+ TCK + +++
Sbjct: 96 GNKSLASNYRPISLTSITCKIMEHIL 121
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -3
Query: 650 VPFPPYSIGNKSLSKN----SVPVSIVLCTCKRLANLV 549
+P P S+ SKN S+PVSI +CK L NLV
Sbjct: 283 LPLPHLSLAVHMFSKNVHDDSLPVSIQTMSCKLLLNLV 320
>SB_12308| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 907
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 626 GNKSLSKNSVPVSIVLCTCKRLANLV 549
GNKSL+ N P+S+ TCK + +++
Sbjct: 581 GNKSLASNYRPISLTSITCKIMEHIL 606
>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1230
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 626 GNKSLSKNSVPVSIVLCTCKRLANLV 549
GNKSL+ N P+S+ TCK + +++
Sbjct: 950 GNKSLASNYRPISLTSITCKIMEHIL 975
>SB_6188| Best HMM Match : Transposase_23 (HMM E-Value=0.41)
Length = 531
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -3
Query: 626 GNKSLSKNSVPVSIVLCTCKRLANLV 549
GNKSL+ N P+S+ TCK + +++
Sbjct: 379 GNKSLASNYRPISLTSITCKIMEHIL 404
>SB_21992| Best HMM Match : LRR_1 (HMM E-Value=3.2e-07)
Length = 534
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -3
Query: 641 PPYSIGNKSLSKNSVPVSIVLCTCKRLANLV-LTTCLN 531
P + G++SL+ N P+S+ CK L ++V + C+N
Sbjct: 392 PVHKKGDRSLASNYRPISLTSVICKILEHIVSQSVCVN 429
>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1346
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 161 EEIRHQRFKRAQIIDTCFGSFHKTFRCYKRALQ 63
E R Q R IIDTC+GS + + K AL+
Sbjct: 652 ETQRLQNCSRRLIIDTCYGSLYVVYPKLKDALE 684
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,134,072
Number of Sequences: 59808
Number of extensions: 471607
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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