Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31167
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.51 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.2  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 304 YKYIV-VVSEYLKIHDYC 354
           YKYI  ++ ++LKIHD C
Sbjct: 312 YKYITPLIQKHLKIHDTC 329


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 609 GQRFITNRIRWKWNDL 656
           G   I +   WKWND+
Sbjct: 29  GHDAIVHLFEWKWNDI 44


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 73 VRSRYSLLKSFFRKWFCFFTQ 11
          ++SR SLL + +++ FC  TQ
Sbjct: 9  LKSRESLLSNAYKQGFCQPTQ 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,763
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)