Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31166
         (359 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   1.5  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   2.7  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   2.7  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   3.5  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   3.5  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   4.7  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    24   6.2  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    24   6.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   8.2  

>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 338  VSSLVSEVRNGFRFAVSVRV-TVASTHSNNNVRLVVVVESLLQLTS 204
            V SL ++  +  R A  V   TVA    +N+ RL VV++SLL + S
Sbjct: 1288 VDSLPTDANDRLREATVVLFGTVAQHLPSNDPRLAVVMDSLLSVLS 1333


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 201 ETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 311
           ETG   E  D++    V+V  +   +    DGKP  I
Sbjct: 85  ETGTYPEKDDENTNLQVVVDTKAQLNVNVNDGKPNDI 121


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -1

Query: 353 FTLSMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLL-QLT 207
           F+   ++ L   + +G  +AVS++  + ++   N+ +L  ++ SLL Q+T
Sbjct: 247 FSAEFLNGLTDHMDSGIDYAVSLQKLIDASMDKNSQKLARLIFSLLYQIT 296


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 213 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADETG 335
           LKE  ++DN P     ++ ++ Y N +G  E ++ F    G
Sbjct: 76  LKELPENDNSPLKHTHIQFAHCYKNQEGWREVLSRFPAGNG 116


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 12/52 (23%), Positives = 23/52 (44%)
 Frame = +3

Query: 156 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNTDGKPETI 311
           A   N    + ++      +++++D   +PHV+VA  G  +        ETI
Sbjct: 97  ALGANLNLKHALIVGGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETI 148


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -1

Query: 254  NNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 105
            +N+ LVV   +  S  Q+TS     ++ SLE  ++  +GA    R +D +V L
Sbjct: 956  SNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 156 AYNYNFETSNGIVRSETGELKEALDDDNKPHVIVA 260
           A    F+  NG+ ++    + EAL   +K H++ A
Sbjct: 65  AMKITFDLINGVYKTVPDRVPEALVSTSKKHLVAA 99


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 213 LKEALDDDNKPHVIVAVRGSYSYTNTDGKPETITYFADE 329
           +K  +DDD+   ++  +R  YS+   +  PE  T F D+
Sbjct: 605 VKYTIDDDSVERIMNCIRAIYSF---EELPEFQTVFLDD 640


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 96   PPTEDYPKIVRSEFDASPDGAYNYNFE 176
            PP +D+P +    F+   +  YNY  E
Sbjct: 1255 PPVKDFPTLEFGSFEKIYNVGYNYGKE 1281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,805
Number of Sequences: 5004
Number of extensions: 23512
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)