Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31166
(359 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0679 - 19398696-19399303,19400425-19400596 29 1.1
09_02_0454 + 9514706-9515776 28 2.5
11_06_0015 + 19281918-19282043,19282263-19282365,19282514-192825... 27 5.9
11_01_0760 + 6385866-6385955,6386629-6386682,6386863-6387012,638... 27 5.9
11_01_0753 + 6333019-6333108,6333427-6333603,6333783-6333836,633... 27 5.9
05_05_0089 - 22305727-22306115,22306206-22306311,22306386-223067... 27 5.9
03_02_0497 - 8891852-8892270,8892368-8892473,8892573-8892911,889... 27 5.9
10_07_0138 + 13325418-13325954 26 7.7
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 26 7.7
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797 26 7.7
01_01_0540 + 3957622-3960903 26 7.7
>09_04_0679 - 19398696-19399303,19400425-19400596
Length = 259
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 140 VEFRPNDLRVVLCRGGSDDGSHKGESYNDDQFHF**FW-FVPCWYP 6
+ FRP LC GG G+ G ++ F FW F+P ++P
Sbjct: 154 LNFRPAKRDAALCHGGDGAGAGGGAAFGSSLF----FWPFLPLFWP 195
>09_02_0454 + 9514706-9515776
Length = 356
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 191 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 90
D VGS +V V V D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220
>11_06_0015 +
19281918-19282043,19282263-19282365,19282514-19282581,
19282687-19282842,19282950-19283078,19283161-19283278,
19283368-19283462,19283579-19283731,19283822-19283917,
19284095-19284196
Length = 381
Score = 26.6 bits (56), Expect = 5.9
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 111 YPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVAVRGSYSYTNT 290
+ +I+ EF D + FE N + L+ + DD HVI+ + + + +
Sbjct: 60 HERIILPEFPYLTDENGDIYFEVDN-----DDALLESIMGDDKTAHVIIGLDNTQVFADL 114
Query: 291 DGKPETITYFADE 329
D + T FA E
Sbjct: 115 DLAAASATEFAQE 127
>11_01_0760 +
6385866-6385955,6386629-6386682,6386863-6387012,
6387120-6387461
Length = 211
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 68 ESYNDDQFHF**FWFV 21
ESYND Q HF WFV
Sbjct: 34 ESYNDSQTHFTTSWFV 49
>11_01_0753 +
6333019-6333108,6333427-6333603,6333783-6333836,
6334015-6334164,6334271-6334612
Length = 270
Score = 26.6 bits (56), Expect = 5.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = -1
Query: 68 ESYNDDQFHF**FWFV 21
ESYND Q HF WFV
Sbjct: 93 ESYNDSQTHFTTSWFV 108
>05_05_0089 -
22305727-22306115,22306206-22306311,22306386-22306730,
22306847-22307257
Length = 416
Score = 26.6 bits (56), Expect = 5.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -1
Query: 215 QLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGG 93
+L + A D VGS +V V V D R VLCR G
Sbjct: 202 ELQTPARCDHVGSTAVVAVVGPNRVVVANSGDSRAVLCRAG 242
>03_02_0497 -
8891852-8892270,8892368-8892473,8892573-8892911,
8893065-8893415
Length = 404
Score = 26.6 bits (56), Expect = 5.9
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -1
Query: 191 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 90
D VGS +V V V D R VLCRGG+
Sbjct: 188 DHVGSTAVVAVLGPRHVVVANCGDSRAVLCRGGA 221
>10_07_0138 + 13325418-13325954
Length = 178
Score = 26.2 bits (55), Expect = 7.7
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 213 AHQFRYARCRWKSRNCSCKLHRGWRRIQTER 121
+ ++R +R RW+SR CS + R WRR + R
Sbjct: 88 SRRWRRSR-RWRSR-CSRRWRRSWRRRRCSR 116
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 26.2 bits (55), Expect = 7.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = -1
Query: 341 MVSSLVSEVRNGFRFAVSVR---VTVASTHSNNNVRLVVV--VESLLQLTSFATHDAVGS 177
+V+ L E+ + F F V + A +H N NVR + + L D + +
Sbjct: 1072 VVAELAEELWDRFGFDVFTDYSGIFDALSHKNYNVRAAAAEALAAALDENLDKMQDTLST 1131
Query: 176 LEIVVVSSIGAGVEF 132
L + + +GAGVEF
Sbjct: 1132 LFSLYIRDLGAGVEF 1146
>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
Length = 518
Score = 26.2 bits (55), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 195 RSETGELKEALDDDNKPHVIVAVRGSYSYTNTDG 296
R E+G L+ L + +PH+++AV + Y T G
Sbjct: 274 RYESGALRRLLRREYRPHLVMAVLITVFYEMTGG 307
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 26.2 bits (55), Expect = 7.7
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -1
Query: 290 SVRVTVASTHSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRV 111
+V + ST+ + V L QL +++ + GS E+V G +P+ R
Sbjct: 253 AVHGELTSTNGKTHAAYFDAVHLLSQLGAYSNYQ-FGSEELV-------GTACKPHPYRD 304
Query: 110 -VLCRGGSDDGSHKGESY 60
VL GG D G +KG S+
Sbjct: 305 DVLAGGGGDRGLYKGTSF 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,595,829
Number of Sequences: 37544
Number of extensions: 186148
Number of successful extensions: 574
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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