Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31166
(359 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog prote... 29 0.74
AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog (hedg... 29 0.74
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 29 0.98
Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical pr... 27 3.0
AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical... 27 5.2
AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical... 27 5.2
U61949-4|AAB03150.2| 414|Caenorhabditis elegans Hypothetical pr... 26 9.1
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 26 9.1
U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha ... 26 9.1
AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical ... 26 9.1
>AF139520-1|AAD33830.1| 176|Caenorhabditis elegans warthog protein
WRT-5 protein.
Length = 176
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 219 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 109
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF000298-2|AAC48258.1| 176|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 5, isoform a protein.
Length = 176
Score = 29.5 bits (63), Expect = 0.74
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 219 PSAHQFRYARCRWKSRNCSCKLHRGWRRIQTERS*GS 109
PS H+ +YA C ++ + +C + W T+ S GS
Sbjct: 48 PSCHEKKYAECPERATSTTCSTNSSWVGGVTQHSDGS 84
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 29.1 bits (62), Expect = 0.98
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 29 KTIKNEIDHRCSSRPCGYRHRCPPY-RGLP*DRSV*IRRQPRWSLQLQFRDFQRHR 193
K +KN++ +R SSR G H+ P + R LP D R+ R + Q +F+ + R
Sbjct: 2529 KFLKNKVHNRRSSRAPGIHHQRPLHPRWLPTDHET-DRKDSRAASQFRFQHMRSKR 2583
>Z82084-6|CAJ85781.1| 156|Caenorhabditis elegans Hypothetical
protein ZK1053.7 protein.
Length = 156
Score = 27.5 bits (58), Expect = 3.0
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 261 VRGSYSYTNTDGKPETITYF 320
++ +YSY N DG P + TY+
Sbjct: 112 IKDTYSYDNVDGTPISCTYY 131
>AC025726-36|AAL27268.1| 487|Caenorhabditis elegans Hypothetical
protein Y71G12B.1b protein.
Length = 487
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 168 NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGS 272
NF + NG+ +G+ + D K +I AVRG+
Sbjct: 174 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGA 208
>AC025726-35|AAL27267.1| 489|Caenorhabditis elegans Hypothetical
protein Y71G12B.1a protein.
Length = 489
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 168 NFETSNGIVRSETGELKEALDDDNKPHVIVAVRGS 272
NF + NG+ +G+ + D K +I AVRG+
Sbjct: 176 NFRSPNGVCWDPSGKYIATMSPDRKMDLIDAVRGA 210
>U61949-4|AAB03150.2| 414|Caenorhabditis elegans Hypothetical
protein F49E8.2 protein.
Length = 414
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 108 DYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALD 230
DY + S +GA + + +T N + SE G L+ +D
Sbjct: 372 DYDIFDNQDETDSEEGARSESIDTGNKVSESEPGSLQSVID 412
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Frame = +1
Query: 109 TTLRSFGLNSTPAPMELT----TTISRLPTASCVAKLVS 213
TT S STPAP T TT+S T C+ VS
Sbjct: 842 TTSPSTTTGSTPAPQSSTVASTTTVSPYTTTECICTTVS 880
>U28742-2|AAA68332.2| 925|Caenorhabditis elegans Adaptin, alpha
chain (clathrinassociated complex) protein 2 protein.
Length = 925
Score = 25.8 bits (54), Expect = 9.1
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -1
Query: 266 THSNNNVRLVVVVESLLQLTSFATHDAVGSLEIVVVSSI----GAGVEFRPNDLRVVLC 102
+H N+R + + L TS +HDAV + +++S+ V R DL +C
Sbjct: 338 SHRETNLRYLALESMCLLATSEFSHDAVKKHQDTIINSLKTERDVSVRQRAVDLLYAMC 396
>AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical
protein Y71F9AR.2 protein.
Length = 244
Score = 25.8 bits (54), Expect = 9.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 139 TPAPMELTTTISRLPTASCVAKL 207
TPAP+ T ++S+L T S + KL
Sbjct: 219 TPAPLHKTPSLSKLKTGSKLLKL 241
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,846,625
Number of Sequences: 27780
Number of extensions: 143152
Number of successful extensions: 497
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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