Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31166
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24290.2 68417.m03488 expressed protein 27 2.8
At4g24290.1 68417.m03487 expressed protein 27 2.8
At3g44060.1 68416.m04720 F-box family protein contains F-box dom... 27 2.8
At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family... 27 2.8
At1g18990.1 68414.m02362 expressed protein contains Pfam profile... 27 2.8
At1g63700.1 68414.m07209 protein kinase, putative contains prote... 27 3.8
At4g08250.1 68417.m01361 scarecrow transcription factor family p... 26 6.6
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot... 26 6.6
At3g50720.1 68416.m05549 protein kinase, putative similar to pro... 26 8.7
At3g27320.1 68416.m03414 expressed protein low similarity to PrM... 26 8.7
>At4g24290.2 68417.m03488 expressed protein
Length = 606
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 167 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 84
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At4g24290.1 68417.m03487 expressed protein
Length = 350
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 167 VVVSSIGAGVEFRPNDLRVVLCRGGSDD 84
V + SIG G + DLR+ C+GGS D
Sbjct: 13 VAIGSIGCGYDLAI-DLRLKYCKGGSKD 39
>At3g44060.1 68416.m04720 F-box family protein contains F-box domain
Pfam:PF00646
Length = 427
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 142 PAPMELTTTISRLPTASCVAKL 207
P M+LT + +LPTASC K+
Sbjct: 403 PKKMQLTEDLLKLPTASCKLKI 424
>At1g48120.1 68414.m05370 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 1338
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +3
Query: 162 NYNFETSNGIVR---SETGELKEALDDD-NKPHVIVAVRGSYSYTNTDGKPETIT 314
+++ +T NG SET E+ + L D KP RG+Y TD K ++ T
Sbjct: 1053 DFSDKTENGSKEADHSETAEISKDLSDTVGKPESCSRTRGTYEAIGTDAKLKSNT 1107
>At1g18990.1 68414.m02362 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 524
Score = 27.5 bits (58), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 186 GIVRSETGELKEALDDDNKP 245
G++R E GE +E LD++ KP
Sbjct: 401 GLLREERGEAEEFLDEETKP 420
>At1g63700.1 68414.m07209 protein kinase, putative contains protein
kinase domain, Pfam:PF00069; similar to MEK kinase
(MAP3Ka) [Arabidopsis thaliana] gi|4204912|gb|AAD10848
Length = 883
Score = 27.1 bits (57), Expect = 3.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 344 SMVSSLVSEVRNGFRFAVSVRVTVASTHSNNN 249
S++S L S+ NG R V++ S HSN N
Sbjct: 157 SLLSPLASDCENGNRTPVNISSRDQSMHSNKN 188
>At4g08250.1 68417.m01361 scarecrow transcription factor family
protein SCARECROW - Arabidopsis thaliana, PID:g1497987
Length = 483
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = -1
Query: 344 SMVSSLVSEVRNGFRFAVSVRVTVASTHSNNNVRLVVVVESLLQLTSFATHDAVG 180
S++ +LVS RN A +R+T S +N + V E+ +LT+FA D++G
Sbjct: 230 SLMQALVS--RNTGPSAQHLRITALSRATNGKKSVAAVQETGRRLTAFA--DSIG 280
>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
protein, Xenopus laevis, PIR:T30335
Length = 1229
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 118 RSFGLNSTPAPMELTTTISRLPTASCVAK 204
R FG N PAP E ++ P A+ V++
Sbjct: 13 RRFGFNDRPAPSESLRSVPCTPEANTVSR 41
>At3g50720.1 68416.m05549 protein kinase, putative similar to
protein kinase ATN1 [Arabidopsis thaliana]
gi|1054633|emb|CAA63387
Length = 377
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 112 TLRSFGLNSTPAPMELTTTIS 174
TL+ F LNS P+P++L ++S
Sbjct: 132 TLQRFMLNSRPSPLDLKVSLS 152
>At3g27320.1 68416.m03414 expressed protein low similarity to PrMC3
[Pinus radiata] GI:5487873
Length = 460
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = +3
Query: 159 YNYNFETSNGIVRSETGELKEALDDDNK--PHVIVAVRGSYSYTNTDGKPE 305
Y+ T N I S+ + +L N H + + R SY YT PE
Sbjct: 94 YSGKARTLNNIAGSDLLSRRNSLGSSNSLLSHKVESRRNSYGYTTGSSSPE 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,406,199
Number of Sequences: 28952
Number of extensions: 134586
Number of successful extensions: 469
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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