Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31165
         (340 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   6.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   6.0  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    20   8.0  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = -1

Query: 256 WNASLNSAT-CFCEN 215
           W +S N  T CFCEN
Sbjct: 686 WTSSDNPCTTCFCEN 700


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 240 FKEAFQLMDHDKD 278
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 240 FKEAFQLMDHDKD 278
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 240 FKEAFQLMDHDKD 278
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 240 FKEAFQLMDHDKD 278
           F +AF++ DH+ D
Sbjct: 617 FDDAFEISDHNDD 629


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 295 TTCAPPWTPWAGS 333
           T+C   WT W G+
Sbjct: 110 TSCTRYWTCWNGT 122


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.313    0.122    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,432
Number of Sequences: 336
Number of extensions: 582
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6558670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)