Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31165
         (340 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    49   2e-07
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    42   2e-05
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    36   0.001
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    35   0.004
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    33   0.012
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   1.8  
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    24   5.5  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    24   5.5  
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch...    24   5.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    24   7.3  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    24   7.3  

>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +3

Query: 174 SRKAKRTGSNVFSMFSQKQVAEFKEAFQLMDHDKDGIIGENDLRATLDSLGR 329
           ++ AKR  S  F+  +  Q+ E KEAF L+D D DG IG  D++  L SL +
Sbjct: 28  AQAAKRASSGAFAQLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQ 79


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 42.3 bits (95), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 26/37 (70%)
 Frame = +3

Query: 219 SQKQVAEFKEAFQLMDHDKDGIIGENDLRATLDSLGR 329
           + +Q+AEF+EAF L D D+DG I  N+L   + SLG+
Sbjct: 7   TDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQ 43



 Score = 27.5 bits (58), Expect = 0.59
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 237 EFKEAFQLMDHDKDGIIGENDLRATLDSLG 326
           E +EAF++ D D +G I   +L   L SLG
Sbjct: 86  EVREAFKVFDKDGNGYITVEELTHVLTSLG 115


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 36.3 bits (80), Expect = 0.001
 Identities = 18/36 (50%), Positives = 24/36 (66%)
 Frame = +3

Query: 219 SQKQVAEFKEAFQLMDHDKDGIIGENDLRATLDSLG 326
           S++Q  E KEAF L D DKDG+I  + + + L SLG
Sbjct: 4   SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLG 39


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 34.7 bits (76), Expect = 0.004
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 219 SQKQVAEFKEAFQLMDHDKDGIIGENDLRATLDSLG 326
           +++Q  +  EAF+L D DKD  I  ++LRA + +LG
Sbjct: 32  TEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALG 67


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 33.1 bits (72), Expect = 0.012
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +3

Query: 237 EFKEAFQLMDHDKDGIIGENDLRATLDSLG 326
           EF + FQ+ D D  G+IG  +LR  L SLG
Sbjct: 78  EFVKGFQVFDKDATGMIGVGELRYVLTSLG 107


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 228 QVAEFKEAFQLMDHDKDGIIGENDLRATLDSLGRLA 335
           + A+FK+ F     DKD +  + +L A ++ L +LA
Sbjct: 212 EYAKFKDKFPEAPLDKDNLQTQKELEARIECLKQLA 247


>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 249 AFQLMDHDKDGIIGENDLRATLDSLGRL 332
           AFQL D D +G+I  +++   +D++ ++
Sbjct: 104 AFQLYDLDNNGLISYDEMLRIVDAIYKM 131


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 155 QAILSRKPQG*AHRIQCLLYVLTEAGRRVQGGIP 256
           + + SR   G   +I CL   LT  G+ + GG+P
Sbjct: 244 EVMTSRLSPGGLQQIYCLKPDLTTLGKYLGGGLP 277


>SPAC1687.14c |||EF hand family protein, unknown
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 237 EFKEAFQLMDHDKDGIIGENDLRATLDSLG 326
           E +EAF L D    G I   DLR +   LG
Sbjct: 13  EAEEAFDLFDVTHKGYIDFEDLRRSCAQLG 42


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 159 QSSRGSRKAKRTGSNVFSMFSQKQVAEFKEAFQL-MDHDKDGIIGEN 296
           ++ R  R+    GSN   M   K+  E KEA  + MD +K   I  N
Sbjct: 825 RAKRAEREKASKGSNDDEMKIDKKTTEEKEATPMEMDEEKSQDISIN 871


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 231 VAEFKEAFQLMDHDKDGIIGENDLRAT 311
           +AEF      ++H K GI G   L+ T
Sbjct: 4   IAEFDGILDSLEHSKTGISGSKILKLT 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.122    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 861,758
Number of Sequences: 5004
Number of extensions: 9359
Number of successful extensions: 38
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)