Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31165
         (340 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   3.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.1  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 278 WDHRRERLARHLGLPGQARV 337
           WD R+E + ++LG+ G + +
Sbjct: 460 WDTRKEYIPQNLGVIGTSNL 479


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 197 IQCLLYVLTEAGRRVQGGIPANGSRQGWDHRRE 295
           IQC+     E   +++  I  +  R G++H+R+
Sbjct: 145 IQCVKKKDIEEALKIREEIRVDPFRTGFEHKRQ 177


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 197 IQCLLYVLTEAGRRVQGGIPANGSRQGWDHRRE 295
           IQC+     E   +++  I  +  R G++H+R+
Sbjct: 145 IQCVKKKDIEEALKIREEIRVDPFRTGFEHKRQ 177


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 270 DKDGIIGENDLRATLD 317
           DK+ ++  NDL + LD
Sbjct: 642 DKEHVLAHNDLMSPLD 657


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 59  AVCWTIDEE 33
           A+CWT DE+
Sbjct: 157 ALCWTQDED 165


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 59  AVCWTIDEE 33
           A+CWT DE+
Sbjct: 210 ALCWTQDED 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.122    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,509
Number of Sequences: 438
Number of extensions: 626
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)