Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31160
         (698 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9PBD7 Cluster: Cationic amino acid transporter; n=25; ...    36   1.3  
UniRef50_Q17Q18 Cluster: Polybromo-1; n=2; Diptera|Rep: Polybrom...    36   1.3  
UniRef50_Q90X96 Cluster: Breast and ovarian cancer susceptibilit...    35   2.2  
UniRef50_Q5HAE6 Cluster: Putative membrane protein; n=2; Ehrlich...    34   3.9  
UniRef50_Q0HXM7 Cluster: Nucleoside recognition domain protein p...    34   3.9  
UniRef50_A2WLD9 Cluster: Putative uncharacterized protein; n=3; ...    33   5.1  
UniRef50_A2DT87 Cluster: WW domain containing protein; n=1; Tric...    33   5.1  
UniRef50_A6SB74 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_O27157 Cluster: Conserved protein; n=1; Methanothermoba...    33   5.1  
UniRef50_A7E7Q5 Cluster: Putative uncharacterized protein; n=1; ...    33   6.7  
UniRef50_Q09DG7 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  
UniRef50_A6EDA3 Cluster: Membrane spanning protein, required for...    33   8.9  
UniRef50_Q950S3 Cluster: Cytochrome b; n=144; Eukaryota|Rep: Cyt...    33   8.9  

>UniRef50_Q9PBD7 Cluster: Cationic amino acid transporter; n=25;
           Bacteria|Rep: Cationic amino acid transporter - Xylella
           fastidiosa
          Length = 483

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
 Frame = -3

Query: 381 YWFFGCSIVVGRWRLFLNYFSVGIGTGAPVTTNSAARGIFD----------NLSCILVIF 232
           Y F   ++ VG W  +LN F    G G P + +SA   + D          NL  + ++ 
Sbjct: 120 YMFSASTVAVG-WSGYLNSFLSSFGYGLPASLSSAPLDVVDGRLIYSGGLINLPAVAIVA 178

Query: 231 VFLGLCFVCIMQHCIQPALQIMI 163
              GLC+V I Q     ++ + I
Sbjct: 179 AISGLCYVGITQSAFVNSITVAI 201


>UniRef50_Q17Q18 Cluster: Polybromo-1; n=2; Diptera|Rep: Polybromo-1
           - Aedes aegypti (Yellowfever mosquito)
          Length = 1680

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 361 TAAKKPVPKAENPQPSVDLSFFQSPPQNLKRT 456
           T AKKP P+ + P+P   +S  QSPPQ+   T
Sbjct: 456 TPAKKPNPQKKTPRPRSSMSMVQSPPQSATST 487


>UniRef50_Q90X96 Cluster: Breast and ovarian cancer susceptibility
            protein; n=3; Xenopus|Rep: Breast and ovarian cancer
            susceptibility protein - Xenopus laevis (African clawed
            frog)
          Length = 1579

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 295  WRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 441
            W T+ D N  +++   P A  +T  K P+PK ++ +       F   P+
Sbjct: 942  WDTTRDKNAALLESCLPSAYGSTGEKTPIPKVQSSEEGSSQGLFNQKPK 990


>UniRef50_Q5HAE6 Cluster: Putative membrane protein; n=2; Ehrlichia
           ruminantium|Rep: Putative membrane protein - Ehrlichia
           ruminantium (strain Welgevonden)
          Length = 147

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -3

Query: 351 GRWRLFLNYFSVGIGT---GAPVTTNSAARGIFDNLSCILVIFVFLGLCFVCIMQHCIQP 181
           GRWR F  Y     GT   G PV  N A   + D L+ I+ + V + L  V +M  C Q 
Sbjct: 9   GRWR-FSRYLIDAFGTWVEGRPVCYNIARYIVLDVLTFIVSVLVLIVLLVVIVMDLCCQI 67

Query: 180 A 178
           A
Sbjct: 68  A 68


>UniRef50_Q0HXM7 Cluster: Nucleoside recognition domain protein
           precursor; n=58; Bacteria|Rep: Nucleoside recognition
           domain protein precursor - Shewanella sp. (strain MR-7)
          Length = 452

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = -3

Query: 357 VVGRWRLFLNYFSVGIGTGAPVTTNSAARGIFDNLSCILVIFVFLGLCFVCIMQHCIQPA 178
           VVG   + L Y  +GIG  A  ++++ A  + D L  +  +F+F G+    ++   +   
Sbjct: 103 VVGAIFIVLTY--LGIGPEAIHSSSTGALVLNDLLPVLFSVFIFAGMLLPLLLNFGLLEL 160

Query: 177 LQIMIVKFLRPMFQL 133
              ++ K +RP+F L
Sbjct: 161 FGTLLTKVMRPVFNL 175


>UniRef50_A2WLD9 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 815

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 319 TKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVI 468
           TK IQK   P    T A+ P+P+A  P+ S+ ++  Q+P   L   +  I
Sbjct: 147 TKDIQKPDEPQPGETQAESPLPEALQPESSLPVTQEQTPGNPLSGLLNAI 196


>UniRef50_A2DT87 Cluster: WW domain containing protein; n=1;
           Trichomonas vaginalis G3|Rep: WW domain containing
           protein - Trichomonas vaginalis G3
          Length = 827

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
 Frame = +1

Query: 286 RRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPS----VDLSFFQSPPQNLKR 453
           ++Y +       K++   +PP+    +     P +EN +PS    +DL   Q  P  +K 
Sbjct: 85  KQYKQLFQQEQKKLLASMNPPSALKQSPNDTKPNSENTKPSNIDEIDLPKAQISPPKIKE 144

Query: 454 TIEVIEHEIEKQV 492
            ++  E EIE Q+
Sbjct: 145 KLQQQEKEIEPQI 157


>UniRef50_A6SB74 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 768

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +1

Query: 283 VRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 462
           V+ YW T+ ++  K          NN  A  PVP  E  +P +D+  F    Q +++  E
Sbjct: 425 VKVYWFTNNEALPKPPANGPFNGANNNGASGPVPARETDEPQIDIEEFAKKQQEVQKAHE 484


>UniRef50_O27157 Cluster: Conserved protein; n=1;
           Methanothermobacter thermautotrophicus str. Delta H|Rep:
           Conserved protein - Methanobacterium thermoautotrophicum
          Length = 175

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 532 ALPPKPTITIESSDEDELKVISIPITRQDLGPNPVFWRKDVCQPVQY 672
           AL  +  +++ + DE+EL+ +   I R  +GP P   RK +C+   Y
Sbjct: 123 ALKKRTEVSLSAEDEEELRRVIHEIDRIIMGPPPAPQRKPICRSCAY 169


>UniRef50_A7E7Q5 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 769

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 16/60 (26%), Positives = 25/60 (41%)
 Frame = +1

Query: 283 VRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE 462
           V+ YW T+ ++  K     S     N     P P  E  +P +D+  F    Q ++R  E
Sbjct: 424 VKVYWYTNPEALPKPPGNASSNGTTNNGTHGPFPTRETDEPQIDIEEFTKKQQEVQRVHE 483


>UniRef50_Q09DG7 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 714

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 307 ADSNTKIIQKESPPANNNTA-AKKPVPKAENPQPSVD 414
           AD+ T      +PPA+N T  A  P P A+NP P  D
Sbjct: 658 ADNPTPPADNPTPPADNPTPPADNPTPPADNPTPPAD 694


>UniRef50_A6EDA3 Cluster: Membrane spanning protein, required for
           outer membrane integrity; n=1; Pedobacter sp. BAL39|Rep:
           Membrane spanning protein, required for outer membrane
           integrity - Pedobacter sp. BAL39
          Length = 526

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = -3

Query: 495 DHLFFNFMLDYLNGSF*ILGRRLEKG*VNRRLGI-LSFWYWFFGCSIVVGRWRLFL 331
           D L+FN   DY+N  F + G +  +  +N R  I L  W   FG   + GR++L L
Sbjct: 356 DSLYFNIGSDYVNSIFKLKGIKEPEVHINTRAAIDLDKWSKIFGMEQLRGRYQLNL 411


>UniRef50_Q950S3 Cluster: Cytochrome b; n=144; Eukaryota|Rep:
           Cytochrome b - Spizellomyces punctatus
          Length = 396

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 517 HPHRLIPGSPVFQFHARLPQWFFLNFGA 434
           HP   IP +P+   H+ +P+W+FL F A
Sbjct: 253 HPDNSIPANPLVTPHSIVPEWYFLPFYA 280


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,004,829
Number of Sequences: 1657284
Number of extensions: 14782638
Number of successful extensions: 47120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47029
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)