Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31160
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 29 3.6
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59) 29 3.6
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98) 29 3.6
SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 28 6.3
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24) 28 8.4
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 28 8.4
SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -3
Query: 372 FGCSIVVGRWRLFLNYFSVGIGTGAPVTTNSAARGIFDNLSCILVIFVFLGLCFVCIMQH 193
F + G W F++ +VG G AP++ + GI L+ +++I V +G +
Sbjct: 921 FFVGVKEGFWWSFISMTTVGYGDRAPISVAARLFGIAWTLTGLVIIAVLVGTISTSLTTR 980
Query: 192 CIQPA 178
I+ A
Sbjct: 981 TIKAA 985
>SB_28109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 583 VHLHQSFQWL*SALVVEPLPQPHPH 509
+HLH++ Q L L+ P+ +P PH
Sbjct: 353 IHLHRALQLLDEILITMPINEPRPH 377
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 264 FDNLSCILVIFVFLGLCFVCIMQHCIQPALQIM 166
F L C I VF G C VC + H + P + +M
Sbjct: 368 FSALKCTQTIAVFQGTCTVC-LTHSVCPVIHLM 399
>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 CRRNTDQEKRK*PKCSSDYRKCPAQHC-SSLLAHQCRFQH*NNSERVATCQQQYCSQKTS 380
C+ T + K++ KC RKC Q C S + + + + + C+ Q C K
Sbjct: 71 CKVQTRKCKKQTRKCKVQTRKCKVQTCKSKVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQ 130
Query: 381 TK 386
T+
Sbjct: 131 TR 132
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 CRRNTDQEKRK*PKCSSDYRKCPAQ-HCSSLLAHQCRFQH*NNSERVATCQQQYCSQKTS 380
C+ T + K + KC RKC Q + +C+ Q + C+ Q C K
Sbjct: 43 CKAQTCKGKVQTRKCKEQTRKCKVQTRKCKVQTRKCKKQTRKCKVQTRKCKVQTCKSKVQ 102
Query: 381 TK 386
T+
Sbjct: 103 TR 104
>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
Length = 341
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 CRRNTDQEKRK*PKCSSDYRKCPAQHC-SSLLAHQCRFQH*NNSERVATCQQQYCSQKTS 380
C+ T + K++ KC RKC Q C S + + + + + C+ Q C K
Sbjct: 71 CKVQTRKCKKQTRKCKVQTRKCKVQTCKSKVQTRKSKVLTRKSKVQTRKCKVQTCKCKVQ 130
Query: 381 TK 386
T+
Sbjct: 131 TR 132
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Frame = +3
Query: 204 CRRNTDQEKRK*PKCSSDYRKCPAQ-HCSSLLAHQCRFQH*NNSERVATCQQQYCSQKTS 380
C+ T + K + KC RKC Q + +C+ Q + C+ Q C K
Sbjct: 43 CKAQTCKGKVQTRKCKEQTRKCKVQTRKCKVQTRKCKKQTRKCKVQTRKCKVQTCKSKVQ 102
Query: 381 TK 386
T+
Sbjct: 103 TR 104
>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
Length = 242
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 310 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVD--LSFFQSPPQNLKRTIEVIEHEIE 483
++ T + E+P + P+ +AE+P V+ + ++P + ++ T+E +E +E
Sbjct: 2 EARTPAEETEAPVEEAEALGETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEVEAPME 61
Query: 484 K 486
+
Sbjct: 62 E 62
>SB_2412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 505 LIPGSPVFQFHARLPQWFFLNFGAEIGKRISQQK 404
L P + ARLP WF+ + G++ +R+ + K
Sbjct: 93 LPPRKSIHSILARLPPWFYFDVGSDQNRRVVRAK 126
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 337 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 441
ESPP++ + P + P+PS S +PPQ
Sbjct: 737 ESPPSSKHPPTVSPSSSSAPPRPSTPPSVSSAPPQ 771
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 325 IIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQ 441
++ K SPPA NT+ +K V E+ + + ++ Q PQ
Sbjct: 28 LLPKRSPPAIENTSPQKRVRLCEHDRNFIHVNLIQILPQ 66
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +1
Query: 310 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLS-----FFQSPPQNLKRTIEVIEH 474
+++ +++ +S +N P+ P PSVD+S F +PPQ+L + H
Sbjct: 1397 NTHPALVRADSSEEPSNAPKHSPLGSRHQPPPSVDMSQPPPPAFAAPPQHLPHLGGAVTH 1456
>SB_57349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 250 LHFGYFRFSWSVFRLHNAALHTTCPPN 170
LHF F+ + H +TTCPPN
Sbjct: 43 LHFNLMIFAMGTPQFHCDVTNTTCPPN 69
>SB_23391| Best HMM Match : 7tm_1 (HMM E-Value=1e-24)
Length = 540
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = -2
Query: 457 WFFLNFGAEIGKRISQQKAGDSQLLVLVFWLQYCCW 350
W A +G R ++++A ++ L+ + +CCW
Sbjct: 265 WTVRKSSAAVGSRNAKKEAALARKLMAIIMTDFCCW 300
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 367 AKKPVPKAENPQPSVDLSFFQSPPQNLKRTIE-VIEHEIEKQV 492
A+K P+AE +Q+P Q +R +E I+H +EK +
Sbjct: 516 ARKCEPQAEKIYEPQSKKIYQAPEQKTQRLLEKQIQHPVEKAI 558
>SB_16217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +1
Query: 274 RSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLK 450
R T R+ S++ + + SPP +++ A+KP ++ PS ++S S P++ K
Sbjct: 182 RDTPRQAPAAKTHSSSTVPRSGSPPVSSSRPAQKPT--SQTALPSTEISGTGSLPKSTK 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,094,644
Number of Sequences: 59808
Number of extensions: 476709
Number of successful extensions: 1379
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -