Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV31160
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    26   0.40 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.40 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    26   0.40 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.4  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 321 SVGIGTGAPVTT-NSAARGIFDNLSCILVIFVFLGLCFVCIMQHCIQPALQIMIVKFLRP 145
           ++G+ T   +TT  S+       +S +  I V+LG CFV +    ++ A     V ++  
Sbjct: 254 ALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYA----TVGYMAK 309

Query: 144 MFQLRIKAKQNITRT 100
             Q+R    Q I  +
Sbjct: 310 RIQMRKNRFQKIAES 324


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 321 SVGIGTGAPVTT-NSAARGIFDNLSCILVIFVFLGLCFVCIMQHCIQPALQIMIVKFLRP 145
           ++G+ T   +TT  S+       +S +  I V+LG CFV +    ++ A     V ++  
Sbjct: 254 ALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYA----TVGYMAK 309

Query: 144 MFQLRIKAKQNITRT 100
             Q+R    Q I  +
Sbjct: 310 RIQMRKNRFQKIAES 324


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = -3

Query: 321 SVGIGTGAPVTT-NSAARGIFDNLSCILVIFVFLGLCFVCIMQHCIQPALQIMIVKFLRP 145
           ++G+ T   +TT  S+       +S +  I V+LG CFV +    ++ A     V ++  
Sbjct: 193 ALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYA----TVGYMAK 248

Query: 144 MFQLRIKAKQNITRT 100
             Q+R    Q I  +
Sbjct: 249 RIQMRKNRFQKIAES 263


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = +1

Query: 535 LPPKPTITIESSDEDELKVIS-IPITRQDLGPNPVFWRKDV 654
           LP K T T      D +     IPI R   G  P+F R+++
Sbjct: 139 LPGKSTTTTVEVKRDIINPEDVIPIRRTGEGSKPIFEREEI 179


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 337 ESPPANNNTAAKKPVPKAENPQPSVDLSFFQS 432
           +S  A  +T+   P   + +P PS   SFF S
Sbjct: 71  DSAAAITSTSPSYPGGGSSSPSPSSPSSFFSS 102


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +1

Query: 373 KPVPKAENPQPSVDLSFFQSPP 438
           KP+P  +NP+ + +L +  + P
Sbjct: 307 KPLPMVDNPESTGNLVYIYNNP 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,556
Number of Sequences: 438
Number of extensions: 4548
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)