Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV31160
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g49530.1 68418.m06130 SIN-like family protein low similarity ... 31 0.97
At3g46330.1 68416.m05017 leucine-rich repeat protein kinase, put... 30 1.7
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 29 3.9
At3g51510.1 68416.m05641 expressed protein 29 3.9
At1g79130.1 68414.m09227 auxin-responsive family protein similar... 29 3.9
At2g31820.1 68415.m03886 ankyrin repeat family protein contains ... 28 5.2
At1g42460.1 68414.m04896 Ulp1 protease family protein contains P... 28 5.2
At2g18470.1 68415.m02151 protein kinase family protein contains ... 28 6.8
At4g32030.2 68417.m04559 expressed protein 27 9.0
At4g15400.1 68417.m02354 transferase family protein similar to d... 27 9.0
At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta... 27 9.0
At1g07550.1 68414.m00808 leucine-rich repeat protein kinase, put... 27 9.0
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 27 9.0
>At5g49530.1 68418.m06130 SIN-like family protein low similarity to
Sex-lethal interactor [Drosophila melanogaster]
GI:6049274; contains Pfam profile PF04801: Sin-like
protein conserved region
Length = 689
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 310 DSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSPPQNLKRTIEVIEHEIEKQ 489
D K + K A KP PK P+P+ D Q PPQ+ ++ EH+++ +
Sbjct: 6 DDKPKEVTKTRRFAPGRAGKSKPKPK---PEPTADKPV-QPPPQSQTESVSKTEHDVDAK 61
Query: 490 VI 495
+
Sbjct: 62 FV 63
>At3g46330.1 68416.m05017 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 878
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 553 ITIESSDEDELKVISIPITRQDLGPNPVFWRKDVCQPVQYL 675
+ + S +E++V++I R G + + W+ D C P Q+L
Sbjct: 357 LQLPQSQTNEIEVVAIKNIRTTYGLSRISWQGDPCVPKQFL 397
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/78 (24%), Positives = 32/78 (41%)
Frame = +1
Query: 442 NLKRTIEVIEHEIEKQVILXXXXXXXXXXXALPPKPTITIESSDEDELKVISIPITRQDL 621
NLK+ + EH + ++ A P T TI + +L+V + I ++
Sbjct: 371 NLKKIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYLQIAKKSS 430
Query: 622 GPNPVFWRKDVCQPVQYL 675
NP W + V Q Y+
Sbjct: 431 SYNPYRWVRYVTQANSYV 448
>At3g51510.1 68416.m05641 expressed protein
Length = 181
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 274 RSTVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENP-QPSVDLSFFQSP 435
RSTVRR T+A +K KES P+ N + +P P A N + S F+ P
Sbjct: 49 RSTVRRLVVTAATEGSK-KSKESEPSWANPDSDEPPPWARNEGRSSTSQESFEVP 102
>At1g79130.1 68414.m09227 auxin-responsive family protein similar to
auxin-induced protein X10A (SP:P33080) [Glycine max]
Length = 134
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 603 HHPPRSWTKPCLLEKRCVSASPVPSG 680
HHP +++ L KR AS VPSG
Sbjct: 26 HHPTSTYSSSVFLVKRATVASSVPSG 51
>At2g31820.1 68415.m03886 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 662
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 412 DLSFFQSPPQNLKRTIEVIEHEIEKQV 492
DL Q+P + LK+T+ I+HE++ Q+
Sbjct: 423 DLGKPQNPAKQLKQTVSDIKHEVQSQL 449
>At1g42460.1 68414.m04896 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 762
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/42 (30%), Positives = 17/42 (40%)
Frame = +1
Query: 280 TVRRYWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQP 405
T + AD NT + PP N A P+P +P P
Sbjct: 292 TQAEHTAADADGNTNDVSSPDPPNKNAEADVNPIPPPCHPVP 333
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +1
Query: 319 TKIIQKESPPAN-NNTAAKKPVPKAENPQPSVDLSFFQSPPQN 444
T SPP+N N+T + P P +P P S PP +
Sbjct: 11 TNSTSSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSSSPPPDS 53
>At4g32030.2 68417.m04559 expressed protein
Length = 204
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = -1
Query: 200 CSIAYNLPSKS*SLSSFVPCFSCELKQNKTSHELNIIANVNLIYC*ITESITIKIKGYFY 21
CS + SK + CFS LK+ K+S EL N+ L E + + FY
Sbjct: 119 CSTSTGSGSKVFPTNEITSCFSKRLKKRKSSFELKNEENLKLKERLDLEKVDFRCYSLFY 178
>At4g15400.1 68417.m02354 transferase family protein similar to
deacetylvindoline 4-O-acetyltransferase [Catharanthus
roseus][GI:4091808][PMID:9681034], benzylalcohol
acetyltransferase [Clarkia
breweri][GI:6166336][PMID:10588064]
Length = 435
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -3
Query: 327 YFSVGIGTGAPVTTNSAARGIFDNLSCILVI 235
++ V G+G+PV A+ I+DN+ +++I
Sbjct: 365 FYEVDFGSGSPVWVGYASHTIYDNMVGVVLI 395
>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
ontains Pfam profile PF00032: Cytochrome
b(C-terminal)/b6/petD; 99% identical to apocytochrome B
(GI:6851014), cytochrome b (GI:402962), and Cytochrome b
(Swiss-Prot:P42792) [Arabidopsis thaliana]
Length = 393
Score = 27.5 bits (58), Expect = 9.0
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 517 HPHRLIPGSPVFQFHARLPQWFFLNFGAEIGKRISQQKAGDSQLLVLVF 371
HP IP +P+ +P+W+FL A + R KAG + VF
Sbjct: 259 HPDNYIPANPMSTPPHIVPEWYFLPIHAIL--RSIPDKAGGVAAIAPVF 305
>At1g07550.1 68414.m00808 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 864
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +1
Query: 553 ITIESSDEDELKVISIPITRQDLGPNPVFWRKDVCQPVQYL 675
I S+ ++ VI++ + G N + W+ D C P Q+L
Sbjct: 355 IEFPQSETNQNDVIAVKNIQASYGLNRISWQGDPCVPKQFL 395
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +1
Query: 292 YWRTSADSNTKIIQKESPPANNNTAAKKPVPKAENPQPSVDLSFFQSP 435
YW T+ + ++QK PA A K P + + LSF SP
Sbjct: 1167 YWLTNTSALLFLLQKSLKPAGAGATASKKPPITTSLFGRMALSFRSSP 1214
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,670
Number of Sequences: 28952
Number of extensions: 334559
Number of successful extensions: 1073
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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